Strain identifier
BacDive ID: 24037
Type strain:
Species: Chryseobacterium carnipullorum
Strain Designation: 10_R23577
Strain history: <- C. J. Hugo, Univ. of the Free State, Dept. of Microbial, Biochem. and Food Biotechnol., Bloemfontein, South Africa; 10_R23577 <- H. de Beer
NCBI tax ID(s): 1124835 (species)
General
@ref: 20932
BacDive-ID: 24037
DSM-Number: 25580
keywords: 16S sequence, Bacteria, mesophilic
description: Chryseobacterium carnipullorum 10_R23577 is a mesophilic bacterium that was isolated from raw chicken in a poultry processing plant.
NCBI tax id
- NCBI tax id: 1124835
- Matching level: species
strain history
- @ref: 20932
- history: <- C. J. Hugo, Univ. of the Free State, Dept. of Microbial, Biochem. and Food Biotechnol., Bloemfontein, South Africa; 10_R23577 <- H. de Beer
doi: 10.13145/bacdive24037.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Weeksellaceae
- genus: Chryseobacterium
- species: Chryseobacterium carnipullorum
- full scientific name: Chryseobacterium carnipullorum Charimba et al. 2013
@ref: 20932
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Weeksellaceae
genus: Chryseobacterium
species: Chryseobacterium carnipullorum
full scientific name: Chryseobacterium carnipullorum Charimba et al. 2013
strain designation: 10_R23577
type strain: no
Culture and growth conditions
culture medium
- @ref: 20932
- name: TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545)
- growth: yes
- link: https://mediadive.dsmz.de/medium/545
- composition: Name: TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545) Composition: Casein peptone 17.0 g/l NaCl 5.0 g/l Soy peptone 3.0 g/l D(+)-Glucose 2.5 g/l K2HPO4 2.5 g/l Distilled water
culture temp
- @ref: 20932
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 20932
- sample type: raw chicken in a poultry processing plant
- geographic location: Free State Prov., Bloemfontein
- country: South Africa
- origin.country: ZAF
- continent: Africa
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Engineered | #Food production | #Meat |
#Engineered | #Industrial | #Plant (Factory) |
#Host | #Birds | #Chicken |
taxonmaps
- @ref: 69479
- File name: preview.99_3362.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_76;96_753;97_1893;98_2323;99_3362&stattab=map
- Last taxonomy: Chryseobacterium
- 16S sequence: JN935270
- Sequence Identity:
- Total samples: 749
- soil counts: 166
- aquatic counts: 108
- animal counts: 434
- plant counts: 41
Safety information
risk assessment
- @ref: 20932
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20932
- description: Chryseobacterium carnipullorum strain 10_R23577 16S ribosomal RNA gene, partial sequence
- accession: JN935270
- length: 1423
- database: ena
- NCBI tax ID: 1124835
GC content
- @ref: 20932
- GC-content: 36.6
- method: high performance liquid chromatography (HPLC)
External links
@ref: 20932
culture collection no.: DSM 25580, LMG 26734
straininfo link
- @ref: 88010
- straininfo: 378579
literature
- topic: Phylogeny
- Pubmed-ID: 23456810
- title: Chryseobacterium carnipullorum sp. nov., isolated from raw chicken.
- authors: Charimba G, Jooste P, Albertyn J, Hugo C
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.049445-0
- year: 2013
- mesh: Animals, Bacterial Typing Techniques, Base Composition, Chickens/*microbiology, Chryseobacterium/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/analysis, Food Contamination, *Food Microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, Poultry/microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, South Africa, Vitamin K 2/analogs & derivatives/analysis
- topic2: Biotechnology
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
20932 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-25580 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25580) | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
88010 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID378579.1 |