Strain identifier

BacDive ID: 24001

Type strain: Yes

Species: Vagococcus entomophilus

Strain Designation: VOSTP2

Culture col. no.: DSM 24756, CCM 7946

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 20907

BacDive-ID: 24001

DSM-Number: 24756

keywords: Bacteria, 16S sequence, genome sequence, mesophilic

description: Vagococcus entomophilus VOSTP2 is a mesophilic bacterium that was isolated from digestive tract of wasp .

strain history: <- J. Killer, Inst. Animal Physiol. and Genetics, Czech Acad. Sci., Prague; VOSTP2

doi: 10.13145/bacdive24001.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/firmicutes
  • domain: Bacteria
  • phylum: Firmicutes
  • class: Bacilli
  • order: Lactobacillales
  • family: Enterococcaceae
  • genus: Vagococcus
  • species: Vagococcus entomophilus
  • full scientific name: Vagococcus entomophilus Killer et al. 2014

@ref: 20907

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Enterococcaceae

genus: Vagococcus

species: Vagococcus entomophilus

full scientific name: Vagococcus entomophilus Killer et al. 2014

strain designation: VOSTP2

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 20907
  • name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
  • growth: yes
  • link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium92.pdf

culture temp

  • @ref: 20907
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 20907
  • sample type: digestive tract of wasp (Vespula vulgaris)
  • host species: Vespula vulgaris
  • geographic location: Modrany, Prague
  • country: Czech Republic
  • origin.country: CZE
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Arthropoda#Insecta
#Host Body-Site#Gastrointestinal tract

Safety information

risk assessment

  • @ref: 20907
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20907
  • description: Vagococcus entomophilus strain VOSTP2 16S ribosomal RNA gene, partial sequence
  • accession: JQ363620
  • length: 1430
  • database: ena
  • NCBI tax ID: 1160095

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Vagococcus entomophilus DSM 24756GCA_003987595contigncbi1160095
66792Vagococcus entomophilus strain DSM 247561160095.3wgspatric1160095

GC content

  • @ref: 20907
  • GC-content: 39.7
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 20907

culture collection no.: DSM 24756, CCM 7946

straininfo link

@refpassport
20218http://www.straininfo.net/strains/894257
20218http://www.straininfo.net/strains/894258

Reference

@idauthorstitledoi/urljournalpubmedcatalogue
20215D.Gleim, M.Kracht, N.Weiss et. al.Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes sincehttp://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.StrainInfo introduces electronic passports for microorganisms.10.1016/j.syapm.2013.11.002Syst Appl Microbiol. 37: 42-50 201424321274
20907Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-24756Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24756)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes