version 5.0 (current version)
General
@ref: 20907
BacDive-ID: 24001
DSM-Number: 24756
keywords: Bacteria, 16S sequence, genome sequence, mesophilic
description: Vagococcus entomophilus VOSTP2 is a mesophilic bacterium that was isolated from digestive tract of wasp .
strain history: <- J. Killer, Inst. Animal Physiol. and Genetics, Czech Acad. Sci., Prague; VOSTP2
doi: 10.13145/bacdive24001.20201210.5
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/firmicutes
- domain: Bacteria
- phylum: Firmicutes
- class: Bacilli
- order: Lactobacillales
- family: Enterococcaceae
- genus: Vagococcus
- species: Vagococcus entomophilus
- full scientific name: Vagococcus entomophilus Killer et al. 2014
@ref: 20907
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Enterococcaceae
genus: Vagococcus
species: Vagococcus entomophilus
full scientific name: Vagococcus entomophilus Killer et al. 2014
strain designation: VOSTP2
type strain: yes
Culture and growth conditions
culture medium
- @ref: 20907
- name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
- growth: yes
- link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium92.pdf
culture temp
- @ref: 20907
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 20907
- sample type: digestive tract of wasp (Vespula vulgaris)
- host species: Vespula vulgaris
- geographic location: Modrany, Prague
- country: Czech Republic
- origin.country: CZE
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Arthropoda | #Insecta |
| #Host Body-Site | #Gastrointestinal tract |
Safety information
risk assessment
- @ref: 20907
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20907
- description: Vagococcus entomophilus strain VOSTP2 16S ribosomal RNA gene, partial sequence
- accession: JQ363620
- length: 1430
- database: ena
- NCBI tax ID: 1160095
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Vagococcus entomophilus DSM 24756 | GCA_003987595 | contig | ncbi | 1160095 |
| 66792 | Vagococcus entomophilus strain DSM 24756 | 1160095.3 | wgs | patric | 1160095 |
GC content
- @ref: 20907
- GC-content: 39.7
- method: high performance liquid chromatography (HPLC)
External links
@ref: 20907
culture collection no.: DSM 24756, CCM 7946
straininfo link
| @ref | passport |
|---|---|
| 20218 | http://www.straininfo.net/strains/894257 |
| 20218 | http://www.straininfo.net/strains/894258 |
Reference
| @id | authors | title | doi/url | journal | pubmed | catalogue |
|---|---|---|---|---|---|---|
| 20215 | D.Gleim, M.Kracht, N.Weiss et. al. | Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since | http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | StrainInfo introduces electronic passports for microorganisms. | 10.1016/j.syapm.2013.11.002 | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 20907 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-24756 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24756) | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |