Strain identifier

BacDive ID: 23976

Type strain: No

Species: Yersinia enterocolitica

Strain Designation: 6471/76

Strain history: <- M. Skurnik, Haartman Institute, University of Helsinki

NCBI tax ID(s): 630 (species)

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General

@ref: 20916

BacDive-ID: 23976

DSM-Number: 23248

keywords: Bacteria, mesophilic

description: Yersinia enterocolitica 6471/76 is a mesophilic bacterium that was isolated from stool.

NCBI tax id

  • NCBI tax id: 630
  • Matching level: species

strain history

  • @ref: 20916
  • history: <- M. Skurnik, Haartman Institute, University of Helsinki

doi: 10.13145/bacdive23976.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Yersiniaceae
  • genus: Yersinia
  • species: Yersinia enterocolitica
  • full scientific name: Yersinia enterocolitica (Schleifstein and Coleman 1939) Frederiksen 1964 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Bacterium enterocoliticum

@ref: 20916

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Yersiniaceae

genus: Yersinia

species: Yersinia enterocolitica

full scientific name: Yersinia enterocolitica (Schleifstein and Coleman 1939) Frederiksen 1964

strain designation: 6471/76

type strain: no

Culture and growth conditions

culture medium

  • @ref: 20916
  • name: CASO AGAR (MERCK 105458) (DSMZ Medium 220)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/220
  • composition: Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water

culture temp

  • @ref: 20916
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836830849L-arabinose+fermentation
6836827613amygdalin+fermentation
6836828053melibiose-fermentation
6836817992sucrose+fermentation
6836862345L-rhamnose-fermentation
6836830911sorbitol+fermentation
6836817268myo-inositol+fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
683685291gelatin-hydrolysis
6836827897tryptophan-energy source
6836816199urea+hydrolysis
6836816947citrate-assimilation
6836818257ornithine+degradation
6836825094lysine-degradation
6836829016arginine-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinyes
6836835581indoleno
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin+
6836835581indole-

enzymes

@refvalueactivityec
68368cytochrome oxidase-1.9.3.1
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease+3.5.1.5
68368ornithine decarboxylase+4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase+3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
20916+--+--+--+-++++-+-++-

Isolation, sampling and environmental information

isolation

  • @ref: 20916
  • sample type: stool
  • geographic location: Turku
  • country: Finland
  • origin.country: FIN
  • continent: Europe

isolation source categories

  • Cat1: #Host Body Product
  • Cat2: #Gastrointestinal tract
  • Cat3: #Feces (Stool)

Safety information

risk assessment

  • @ref: 20916
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

External links

@ref: 20916

culture collection no.: DSM 23248

straininfo link

  • @ref: 87957
  • straininfo: 400825

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Metabolism7934875Hydrophobic domains affect the collagen-binding specificity and surface polymerization as well as the virulence potential of the YadA protein of Yersinia enterocolitica.Tamm A, Tarkkanen AM, Korhonen TK, Kuusela P, Toivanen P, Skurnik MMol Microbiol10.1111/j.1365-2958.1993.tb00971.x1993*Adhesins, Bacterial, Amino Acid Sequence, Animals, Bacterial Outer Membrane Proteins/chemistry/genetics/*metabolism, Base Sequence, Binding Sites, Collagen/*metabolism, DNA Primers/genetics, DNA, Bacterial/genetics, Extracellular Matrix/metabolism, Female, Genes, Bacterial, Humans, In Vitro Techniques, Mice, Mice, Inbred DBA, Molecular Sequence Data, Plasmids/genetics, Polymers/metabolism, Sequence Deletion, Virulence, Yersinia enterocolitica/genetics/*metabolism/pathogenicityPathogenicity
Phylogeny8559076A novel locus of Yersinia enterocolitica serotype O:3 involved in lipopolysaccharide outer core biosynthesis.Skurnik M, Venho R, Toivanen P, al-Hendy AMol Microbiol10.1111/j.1365-2958.1995.mmi_17030575.x1995Amino Acid Sequence, Bacterial Proteins/genetics, Bacteriophages/genetics/isolation & purification, Base Sequence, DNA Transposable Elements, DNA, Bacterial/genetics, *Genes, Bacterial, Genetic Complementation Test, Lipopolysaccharides/*biosynthesis/chemistry, Molecular Sequence Data, Molecular Structure, Mutation, Operon, Sequence Homology, Amino Acid, Serotyping, Yersinia enterocolitica/classification/*genetics/*metabolismGenetics
Pathogenicity16000112Studies of the efficacy of Enterocoliticin, a phage-tail like bacteriocin, as antimicrobial agent against Yersinia enterocolitica serotype O3 in a cell culture system and in mice.Damasko C, Konietzny A, Kaspar H, Appel B, Dersch P, Strauch EJ Vet Med B Infect Dis Vet Public Health10.1111/j.1439-0450.2005.00841.x2005Animals, Bacterial Adhesion/drug effects, Bacteriocins/*pharmacology/therapeutic use, Bacteriophages, Cells, Cultured/microbiology, Duodenum/cytology, Female, Mice, Mice, Inbred BALB C, Microbial Sensitivity Tests, Specific Pathogen-Free Organisms, Stomach/cytology, Swine, Yersinia Infections/drug therapy/*veterinary, Yersinia enterocolitica/classification/*drug effects/physiologyPhylogeny
Stress26841489[THE EFFECT OF waaL LIGASE GENES DELETION ON MOTILITY AND STRESS ADAPTATION REACTIONS OF YERSINIA ENTEROCOLITICA 6471/76].Shevchenko JI, Shilina JV, Pozur VK, Skurnik MTsitol Genet2015Adaptation, Physiological/*genetics, Bacterial Physiological Phenomena/genetics, Carbon-Oxygen Ligases/*genetics, *Gene Deletion, Genetic Complementation Test, Lipopolysaccharides/*biosynthesis, Mutation, Osmotic Pressure/physiology, Stress, Physiological/*genetics, Yersinia enterocolitica/*enzymology/genetics/physiologyEnzymology

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20916Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-23248Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23248)
68368Automatically annotated from API 20E
87957Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID400825.1