Strain identifier
BacDive ID: 23972
Type strain: 
Species: Xenorhabdus khoisanae
Strain Designation: SF362
Strain history: <- C. A. Van Reenen, Dept. Microbiology, Stellenbosch Univ., South Africa; SF362 <- T. Ferreira, Department of Conservation Ecology and Entomology, University of Stellenbosch
NCBI tax ID(s): 880157 (species)
version 8.1 (current version)
General
@ref: 20912
BacDive-ID: 23972
DSM-Number: 26374
keywords: 16S sequence, Bacteria, mesophilic, animal pathogen
description: Xenorhabdus khoisanae SF362 is a mesophilic animal pathogen that was isolated from entomopathogenic nematode Steinernema khoisanae.
NCBI tax id
- NCBI tax id: 880157
- Matching level: species
strain history
- @ref: 20912
- history: <- C. A. Van Reenen, Dept. Microbiology, Stellenbosch Univ., South Africa; SF362 <- T. Ferreira, Department of Conservation Ecology and Entomology, University of Stellenbosch
doi: 10.13145/bacdive23972.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Morganellaceae
- genus: Xenorhabdus
- species: Xenorhabdus khoisanae
- full scientific name: Xenorhabdus khoisanae Ferreira et al. 2013
@ref: 20912
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacteriales, not validated
family: Morganellaceae
genus: Xenorhabdus
species: Xenorhabdus khoisanae
full scientific name: Xenorhabdus khoisanae Ferreira et al. 2013
strain designation: SF362
type strain: no
Morphology
multimedia
- @ref: 20912
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_26374.jpg
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
- @ref: 20912
- name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)
- growth: yes
- link: https://mediadive.dsmz.de/medium/535
- composition: Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
culture temp
- @ref: 20912
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 68369 | 25115 | malate | + | assimilation |
| 68369 | 17128 | adipate | - | assimilation |
| 68369 | 27689 | decanoate | + | assimilation |
| 68369 | 24265 | gluconate | + | assimilation |
| 68369 | 17306 | maltose | + | assimilation |
| 68369 | 59640 | N-acetylglucosamine | + | assimilation |
| 68369 | 16899 | D-mannitol | - | assimilation |
| 68369 | 16024 | D-mannose | + | assimilation |
| 68369 | 30849 | L-arabinose | - | assimilation |
| 68369 | 17634 | D-glucose | + | assimilation |
| 68369 | 5291 | gelatin | + | hydrolysis |
| 68369 | 4853 | esculin | - | hydrolysis |
| 68369 | 16199 | urea | + | hydrolysis |
| 68369 | 29016 | arginine | + | hydrolysis |
| 68369 | 17634 | D-glucose | - | fermentation |
| 68369 | 27897 | tryptophan | + | energy source |
| 68369 | 17632 | nitrate | - | reduction |
metabolite production
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- production: yes
metabolite tests
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- indole test: +
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 68369 | cytochrome oxidase | - | 1.9.3.1 |
| 68369 | gelatinase | + | |
| 68369 | beta-glucosidase | - | 3.2.1.21 |
| 68369 | urease | + | 3.5.1.5 |
| 68369 | arginine dihydrolase | + | 3.5.3.6 |
API 20NE
| @ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC | OX |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20912 | - | + | - | + | + | - | + | - | + | - | + | - | + | + | + | + | - | + | + | - | - |
Isolation, sampling and environmental information
isolation
- @ref: 20912
- sample type: entomopathogenic nematode Steinernema khoisanae
- host species: Steinernema khoisanae
- geographic location: Western Cape Province
- country: South Africa
- origin.country: ZAF
- continent: Africa
isolation source categories
- Cat1: #Host
- Cat2: #Invertebrates (Other)
- Cat3: #Nematoda
taxonmaps
- @ref: 69479
- File name: preview.99_3300.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_6;96_27;97_28;98_31;99_3300&stattab=map
- Last taxonomy: Xenorhabdus
- 16S sequence: JX623978
- Sequence Identity:
- Total samples: 5
- aquatic counts: 1
- animal counts: 4
Safety information
risk assessment
- @ref: 20912
- pathogenicity animal: yes
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20912
- description: Xenorhabdus khoisanae strain SF362 16S ribosomal RNA gene, partial sequence
- accession: JX623978
- length: 1524
- database: ena
- NCBI tax ID: 880157
External links
@ref: 20912
culture collection no.: DSM 26374
straininfo link
- @ref: 87953
- straininfo: 404107
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 20912 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-26374 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26374) | |
| 68369 | Automatically annotated from API 20NE | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 87953 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID404107.1 |