Strain identifier
BacDive ID: 23864
Type strain: 
Species: Hungatella effluvii
Strain Designation: UB-B.2
Strain history: <- S. Korpole, MTCC; UB-B.2 <- S. Korpole {2009}
NCBI tax ID(s): 1096246 (species)
version 8.1 (current version)
General
@ref: 21317
BacDive-ID: 23864
DSM-Number: 24995
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, spore-forming, motile
description: Hungatella effluvii UB-B.2 is an anaerobe, spore-forming, motile bacterium that was isolated from probiotic industry effluent.
NCBI tax id
- NCBI tax id: 1096246
- Matching level: species
strain history
- @ref: 21317
- history: <- S. Korpole, MTCC; UB-B.2 <- S. Korpole {2009}
doi: 10.13145/bacdive23864.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Clostridiaceae
- genus: Hungatella
- species: Hungatella effluvii
- full scientific name: Hungatella effluvii Kaur et al. 2014
@ref: 21317
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Clostridiaceae
genus: Hungatella
species: Hungatella effluvii
full scientific name: Hungatella effluvii Kaur et al. 2014
strain designation: UB-B.2
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 90.346 | |
| 69480 | 99.72 | positive |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 21317 | anaerobe | |
| 69480 | anaerobe | 98.921 |
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | yes | 96 |
| 69480 | yes | 99.12 |
Isolation, sampling and environmental information
isolation
- @ref: 21317
- sample type: probiotic industry effluent
- geographic location: Hyderabad
- country: India
- origin.country: IND
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Food production | #Dairy product |
| #Engineered | #Industrial | |
| #Engineered | #Waste | #Wastewater |
taxonmaps
- @ref: 69479
- File name: preview.99_4228.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_16;96_1971;97_2369;98_2924;99_4228&stattab=map
- Last taxonomy: Hungatella effluvii subclade
- 16S sequence: HE603919
- Sequence Identity:
- Total samples: 38758
- soil counts: 154
- aquatic counts: 408
- animal counts: 38115
- plant counts: 81
Safety information
risk assessment
- @ref: 21317
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21317
- description: Hungatella effluvii partial 16S rRNA gene, type strain UB-B.2T
- accession: HE603919
- length: 1409
- database: ena
- NCBI tax ID: 1096246
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Hungatella effluvii DSM 24995 | GCA_003201875 | scaffold | ncbi | 1096246 |
| 66792 | Hungatella effluvii strain DSM 24995 | 1096246.3 | wgs | patric | 1096246 |
| 66792 | Hungatella effluvii DSM 24995 | 2770939556 | draft | img | 1096246 |
GC content
- @ref: 21317
- GC-content: 51.4
- method: thermal denaturation, midpoint method (Tm)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 96 | no |
| flagellated | no | 58.972 | no |
| gram-positive | yes | 82.978 | no |
| anaerobic | yes | 97.829 | no |
| halophile | no | 85.717 | no |
| spore-forming | yes | 84.086 | no |
| thermophile | no | 98.991 | no |
| glucose-util | yes | 91.199 | no |
| aerobic | no | 97.533 | yes |
| motile | yes | 79.874 | no |
| glucose-ferment | yes | 73.818 | no |
External links
@ref: 21317
culture collection no.: DSM 24995, MTCC 11101
literature
- topic: Phylogeny
- Pubmed-ID: 24186873
- title: Hungatella effluvii gen. nov., sp. nov., an obligately anaerobic bacterium isolated from an effluent treatment plant, and reclassification of Clostridium hathewayi as Hungatella hathewayi gen. nov., comb. nov.
- authors: Kaur S, Yawar M, Kumar PA, Suresh K
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.056986-0
- year: 2013
- mesh: Bacterial Typing Techniques, Base Composition, Bioreactors/*microbiology, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fermentation, Gram-Positive Endospore-Forming Rods/*classification/genetics/isolation & purification, Molecular Sequence Data, *Phylogeny, Probiotics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
- topic2: Genetics
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 21317 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-24995 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24995) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |