Strain identifier
BacDive ID: 23856
Type strain: 
Species: Clostridium sp.
Strain Designation: 17cr1
Strain history: <- P. H. Janssen, Univ. Melbourne, Australia; 17cr1 <- P. H. Janssen {1985}
NCBI tax ID(s): 1506 (species)
version 8.1 (current version)
General
@ref: 20945
BacDive-ID: 23856
DSM-Number: 16654
keywords: 16S sequence, Bacteria, anaerobe, mesophilic
description: Clostridium sp. 17cr1 is an anaerobe, mesophilic bacterium that was isolated from sediment from tidal mud flats.
NCBI tax id
- NCBI tax id: 1506
- Matching level: species
strain history
- @ref: 20945
- history: <- P. H. Janssen, Univ. Melbourne, Australia; 17cr1 <- P. H. Janssen {1985}
doi: 10.13145/bacdive23856.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Clostridiaceae
- genus: Clostridium
- species: Clostridium sp.
- full scientific name: Clostridium Prazmowski 1880 (Approved Lists 1980)
synonyms
@ref synonym 20215 Tyzzerella 20215 Pseudoclostridium 20215 Lachnoclostridium 20215 Anaerobacter 20215 Inflabilis
@ref: 20945
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Clostridiaceae
genus: Clostridium
species: Clostridium sp.
full scientific name: Clostridium sp.
strain designation: 17cr1
type strain: no
Culture and growth conditions
culture medium
- @ref: 20945
- name: PY + X MEDIUM (DSMZ Medium 104b)
- growth: yes
- link: https://mediadive.dsmz.de/medium/104b
- composition: Name: PY + X MEDIUM (DSMZ Medium 104b) Composition: Yeast extract 10.0 g/l D-Glucose 5.0 g/l Trypticase peptone 5.0 g/l Meat peptone 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Sodium resazurin 0.0005 g/l Distilled water
culture temp
- @ref: 20945
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 20945
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 20945
- sample type: sediment from tidal mud flats
- geographic location: Kawhia, Mangaora Creek
- country: New Zealand
- origin.country: NZL
- continent: Australia and Oceania
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Mud (Sludge) |
| #Environmental | #Aquatic | #Sediment |
| #Environmental | #Terrestrial | #Tidal flat |
taxonmaps
- @ref: 69479
- File name: preview.99_61551.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_34;96_5006;97_33931;98_43678;99_61551&stattab=map
- Last taxonomy: Clostridium
- 16S sequence: AY551086
- Sequence Identity:
- Total samples: 609
- soil counts: 140
- aquatic counts: 309
- animal counts: 140
- plant counts: 20
Sequence information
16S sequences
- @ref: 20945
- description: Clostridium sp. 17cr1 16S ribosomal RNA gene, partial sequence
- accession: AY551086
- length: 1434
- database: ena
- NCBI tax ID: 265944
External links
@ref: 20945
culture collection no.: DSM 16654
straininfo link
- @ref: 87871
- straininfo: 403868
literature
- topic: Metabolism
- Pubmed-ID: 15455192
- title: Propanol as an end product of threonine fermentation.
- authors: Janssen PH
- journal: Arch Microbiol
- DOI: 10.1007/s00203-004-0732-y
- year: 2004
- mesh: 1-Propanol/*metabolism, Clostridium/*metabolism, Fermentation, Species Specificity, Threonine/*metabolism
- topic2: Phylogeny
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 20945 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-16654 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16654) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 87871 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID403868.1 |