Strain identifier
BacDive ID: 23850
Type strain: 
Species: Thiorhodococcus fuscus
Strain Designation: JA363
Strain history: <- Ch Sasikala, Jawaharlal Nehru Technological Univ.
NCBI tax ID(s): 527200 (species)
version 8.1 (current version)
General
@ref: 20873
BacDive-ID: 23850
DSM-Number: 21807
keywords: 16S sequence, Bacteria, anaerobe, mesophilic, motile
description: Thiorhodococcus fuscus JA363 is an anaerobe, mesophilic, motile bacterium that was isolated from sediment from a lagoon.
NCBI tax id
- NCBI tax id: 527200
- Matching level: species
strain history
| @ref | history |
|---|---|
| 20873 | <- C. Sasikala, J.N.T. Univ., Inst. Sci. Technol., Hyderabad, India; JA363 <- K. Sucharitha |
| 67771 | <- Ch Sasikala, Jawaharlal Nehru Technological Univ. |
doi: 10.13145/bacdive23850.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Chromatiales
- family: Chromatiaceae
- genus: Thiorhodococcus
- species: Thiorhodococcus fuscus
- full scientific name: Thiorhodococcus fuscus Lakshmi et al. 2015
@ref: 20873
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Chromatiales
family: Chromatiaceae
genus: Thiorhodococcus
species: Thiorhodococcus fuscus
full scientific name: Thiorhodococcus sp.
strain designation: JA363
type strain: yes
Morphology
cell morphology
| @ref | motility | flagellum arrangement | gram stain |
|---|---|---|---|
| 67771 | yes | monotrichous, polar | |
| 67771 | negative |
Culture and growth conditions
culture temp
- @ref: 67771
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 67771
- oxygen tolerance: anaerobe
observation
- @ref: 67771
- observation: quinones: Q-8
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent | latitude | longitude |
|---|---|---|---|---|---|---|---|
| 20873 | sediment from a lagoon | Chilika lagoon, Orissa | India | IND | Asia | 19.65 | 85.3667 |
| 67771 | From sediment of Satapada | Chilika lagoon, Odisha | India | IND | Asia |
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #Sediment
taxonmaps
- @ref: 69479
- File name: preview.99_114632.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_169;96_2777;97_3415;98_51830;99_114632&stattab=map
- Last taxonomy: Thiorhodococcus
- 16S sequence: AM993157
- Sequence Identity:
- Total samples: 74
- soil counts: 2
- aquatic counts: 71
- animal counts: 1
Sequence information
16S sequences
- @ref: 20873
- description: Thiorhodococcus fuscus 16S rRNA gene, type strain JA363T
- accession: AM993157
- length: 1438
- database: ena
- NCBI tax ID: 527200
GC content
| @ref | GC-content | method |
|---|---|---|
| 20873 | 64 | high performance liquid chromatography (HPLC) |
| 67771 | 64.0 | high performance liquid chromatography (HPLC) |
External links
@ref: 20873
culture collection no.: DSM 21807, KCTC 5701, NBRC 104959
literature
- topic: Phylogeny
- Pubmed-ID: 26268573
- title: Thiorhodococcus fuscus sp. nov., isolated from a lagoon.
- authors: Lakshmi KVNS, Divyasree B, Sucharita K, Sasikala C, Ramana CV
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.000517
- year: 2015
- mesh: Bacterial Typing Techniques, Bacteriochlorophyll A/chemistry, Base Composition, Carotenoids/chemistry, Chromatiaceae/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, India, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry
- topic2: Transcriptome
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 20873 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-21807 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21807) | |
| 67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |