Strain identifier
BacDive ID: 23840
Type strain: 
Species: Chlamydia pecorum
Strain Designation: P787
Strain history: <- D. Longbottom, Moredun Res. Inst., Edinburgh, Scotland, UK; P787
NCBI tax ID(s): 85991 (species)
version 9.3 (current version)
General
@ref: 21077
BacDive-ID: 23840
DSM-Number: 27092
keywords: genome sequence, Bacteria, mesophilic, animal pathogen
description: Chlamydia pecorum P787 is a mesophilic animal pathogen that was isolated from synovial fluid of an affected lamb.
NCBI tax id
- NCBI tax id: 85991
- Matching level: species
strain history
- @ref: 21077
- history: <- D. Longbottom, Moredun Res. Inst., Edinburgh, Scotland, UK; P787
doi: 10.13145/bacdive23840.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/chlamydiota
- domain: Bacteria
- phylum: Chlamydiota
- class: Chlamydiia
- order: Chlamydiales
- family: Chlamydiaceae
- genus: Chlamydia
- species: Chlamydia pecorum
- full scientific name: Chlamydia pecorum Fukushi and Hirai 1992
synonyms
- @ref: 20215
- synonym: Chlamydophila pecorum
@ref: 21077
domain: Bacteria
phylum: Chlamydiae
class: Chlamydiia
order: Chlamydiales
family: Chlamydiaceae
genus: Chlamydia
species: Chlamydia pecorum
full scientific name: Chlamydia pecorum Fukushi and Hirai 1992
strain designation: P787
type strain: no
Morphology
cell morphology
- @ref: 125439
- gram stain: negative
- confidence: 94.4
colony morphology
- @ref: 21077
- incubation period: 8-14 days
Culture and growth conditions
culture medium
- @ref: 21077
- name: CULTIVATION OF CHLAMYDOPHILA PECORUM (DSMZ Medium 1503)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1503
- composition: Name: CULTIVATION MEDIUM FOR CHLAMYDOPHILA PECORUM (DSMZ Medium 1503) Composition: Aminoacids Fetal bovine serum MEM-Medium
culture temp
- @ref: 21077
- growth: positive
- type: growth
- temperature: 37
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 125438 | no | 93.314 |
| 125439 | no | 98.8 |
Isolation, sampling and environmental information
isolation
- @ref: 21077
- sample type: synovial fluid of an affected lamb
- geographic location: Scotland, Edinburgh
- country: United Kingdom
- origin.country: GBR
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Mammals | #Caprinae (Sheep/Goat) |
| #Host Body Product | #Fluids | #Synovial fluid |
| #Host | #Juvenile |
Safety information
risk assessment
- @ref: 21077
- pathogenicity animal: yes
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Chlamydia pecorum P787 | GCA_000470825 | complete | ncbi | 1234369 |
| 66792 | Chlamydia pecorum P787 | 1234369.3 | complete | patric | 1234369 |
| 66792 | Chlamydia pecorum P787 | 2554235368 | complete | img | 1234369 |
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate aerobe | 85.8 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | negative | 94.4 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 61.7 | |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 98.8 | |
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 84.573 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 64.383 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 79.242 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 93.314 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 92.393 | no |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 74.312 | no |
External links
@ref: 21077
culture collection no.: DSM 27092
straininfo link
- @ref: 87862
- straininfo: 408040
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 21077 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-27092 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27092) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 87862 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID408040.1 | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |