Strain identifier
BacDive ID: 23839
Type strain: 
Species: Chlamydia psittaci
Strain Designation: 01DE0183, DC15, 02DC15
Strain history: <- K. Sachse, Friedrich-Loeffler-Institut, Jena, Germany; 02DC15 <- W. Peter and S. Scharf
NCBI tax ID(s): 83554 (species)
version 9.3 (current version)
General
@ref: 21076
BacDive-ID: 23839
DSM-Number: 27008
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Chlamydia psittaci 01DE0183 is a mesophilic bacterium that was isolated from aborted calf fetus.
NCBI tax id
- NCBI tax id: 83554
- Matching level: species
strain history
- @ref: 21076
- history: <- K. Sachse, Friedrich-Loeffler-Institut, Jena, Germany; 02DC15 <- W. Peter and S. Scharf
doi: 10.13145/bacdive23839.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/chlamydiota
- domain: Bacteria
- phylum: Chlamydiota
- class: Chlamydiia
- order: Chlamydiales
- family: Chlamydiaceae
- genus: Chlamydia
- species: Chlamydia psittaci
- full scientific name: Chlamydia psittaci (Lillie 1930) Page 1968 (Approved Lists 1980)
synonyms
@ref synonym 20215 Chlamydophila psittaci 20215 Rickettsia psittaci
@ref: 21076
domain: Bacteria
phylum: Chlamydiae
class: Chlamydiia
order: Chlamydiales
family: Chlamydiaceae
genus: Chlamydia
species: Chlamydia psittaci
full scientific name: Chlamydia psittaci (Lillie 1930) Page 1968
strain designation: 01DE0183, DC15, 02DC15
type strain: no
Morphology
cell morphology
- @ref: 125439
- gram stain: negative
- confidence: 99.8
colony morphology
- @ref: 21076
- incubation period: 3-7 days
Culture and growth conditions
culture medium
- @ref: 21076
- name: CULTIVATION MEDIUM FOR CHLAMYDIAE (DSMZ Medium 1193)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1193
- composition: Name: CULTIVATION MEDIUM FOR CHLAMYDIAE (DSMZ Medium 1193) Composition: Aminoacids Fetal bovine serum IMDM-Medium
culture temp
- @ref: 21076
- growth: positive
- type: growth
- temperature: 37
Physiology and metabolism
oxygen tolerance
- @ref: 125439
- oxygen tolerance: obligate aerobe
- confidence: 94.7
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 125438 | no | 93.849 |
| 125439 | no | 99.9 |
Isolation, sampling and environmental information
isolation
- @ref: 21076
- sample type: aborted calf fetus
- geographic location: Saxony Anhalt, Stendal
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host Body Product | #Urogenital tract | #Abort |
| #Host | #Mammals | #Bovinae (Cow, Cattle) |
| #Host | #Juvenile |
Safety information
risk assessment
- @ref: 21076
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21076
- description: Chlamydia psittaci 02DC15, complete sequence
- accession: NC_017292.1
- length: 1172182
- database: nuccore
- NCBI tax ID: 1112254
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Chlamydia psittaci 02DC15 | GCA_000270425 | complete | ncbi | 1112254 |
| 66792 | Chlamydia psittaci 02DC15 | GCA_000415545 | scaffold | ncbi | 1112254 |
| 66792 | Chlamydia psittaci 02DC15 | 1112254.4 | wgs | patric | 1112254 |
| 66792 | Chlamydia psittaci 02DC15 | 1112254.5 | complete | patric | 1112254 |
| 66792 | Chlamydia psittaci 02DC15 | 651053013 | complete | img | 1112254 |
| 66792 | Chlamydia psittaci 02DC15 | 2541047491 | draft | img | 1112254 |
GC content
- @ref: 21076
- GC-content: 39.1
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate aerobe | 94.7 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | negative | 99.8 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | yes | 74.3 | |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 99.9 | |
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 84.062 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 65.2 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 80.163 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 93.849 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 94.36 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 72.908 | no |
External links
@ref: 21076
culture collection no.: DSM 27008
straininfo link
- @ref: 87861
- straininfo: 397161
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Genetics | 21705611 | Complete genome sequences of four mammalian isolates of Chlamydophila psittaci. | Schofl G, Voigt A, Litsche K, Sachse K, Saluz HP | J Bacteriol | 10.1128/JB.05382-11 | 2011 | Animals, Base Sequence, Cattle, Cattle Diseases/microbiology, Chlamydophila psittaci/*genetics/isolation & purification, Genome, Bacterial, Humans, Mammals, Molecular Sequence Data, Psittacosis/microbiology/*veterinary, Sheep, Sheep Diseases/microbiology, Swine, Swine Diseases/microbiology | Pathogenicity |
| 25595025 | Identification of in vivo-induced bacterial protein antigens during calf infection with Chlamydia psittaci. | Kastner J, Saluz HP, Hanel F | Int J Med Microbiol | 10.1016/j.ijmm.2014.12.022 | 2014 | Animals, Antigens, Bacterial/*biosynthesis/genetics, Bacterial Proteins/*biosynthesis/genetics, Cattle, Chlamydia Infections/microbiology/*veterinary, Chlamydophila psittaci/genetics/*physiology, *Gene Expression Profiling, *Gene Expression Regulation, Bacterial, Lung/microbiology, *Transcriptional Activation | ||
| Pathogenicity | 32848009 | Development of a Plasmid Shuttle Vector System for Genetic Manipulation of Chlamydia psittaci. | Shima K, Weber MM, Schnee C, Sachse K, Kading N, Klinger M, Rupp J | mSphere | 10.1128/mSphere.00787-20 | 2020 | Animals, Birds/microbiology, Chlamydophila psittaci/*genetics, Genetic Engineering/*methods, *Genetic Vectors, Green Fluorescent Proteins/genetics, HeLa Cells, Humans, Luminescent Proteins/genetics, Plasmids/*genetics, Psittacosis/microbiology/*veterinary |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 21076 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-27008 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27008) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 87861 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID397161.1 | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |