Strain identifier

BacDive ID: 23839

Type strain: No

Species: Chlamydia psittaci

Strain Designation: 01DE0183, DC15, 02DC15

Strain history: <- K. Sachse, Friedrich-Loeffler-Institut, Jena, Germany; 02DC15 <- W. Peter and S. Scharf

NCBI tax ID(s): 83554 (species)

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General

@ref: 21076

BacDive-ID: 23839

DSM-Number: 27008

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Chlamydia psittaci 01DE0183 is a mesophilic bacterium that was isolated from aborted calf fetus.

NCBI tax id

  • NCBI tax id: 83554
  • Matching level: species

strain history

  • @ref: 21076
  • history: <- K. Sachse, Friedrich-Loeffler-Institut, Jena, Germany; 02DC15 <- W. Peter and S. Scharf

doi: 10.13145/bacdive23839.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/chlamydiota
  • domain: Bacteria
  • phylum: Chlamydiota
  • class: Chlamydiia
  • order: Chlamydiales
  • family: Chlamydiaceae
  • genus: Chlamydia
  • species: Chlamydia psittaci
  • full scientific name: Chlamydia psittaci (Lillie 1930) Page 1968 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Rickettsia psittaci
    20215Chlamydophila psittaci

@ref: 21076

domain: Bacteria

phylum: Chlamydiae

class: Chlamydiia

order: Chlamydiales

family: Chlamydiaceae

genus: Chlamydia

species: Chlamydia psittaci

full scientific name: Chlamydia psittaci (Lillie 1930) Page 1968

strain designation: 01DE0183, DC15, 02DC15

type strain: no

Morphology

colony morphology

  • @ref: 21076
  • incubation period: 3-7 days

Culture and growth conditions

culture medium

  • @ref: 21076
  • name: CULTIVATION MEDIUM FOR CHLAMYDIAE (DSMZ Medium 1193)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1193
  • composition: Name: CULTIVATION MEDIUM FOR CHLAMYDIAE (DSMZ Medium 1193) Composition: Aminoacids Fetal bovine serum IMDM-Medium

culture temp

  • @ref: 21076
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 21076
  • sample type: aborted calf fetus
  • geographic location: Saxony Anhalt, Stendal
  • country: Germany
  • origin.country: DEU
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host Body Product#Urogenital tract#Abort
#Host#Mammals#Bovinae (Cow, Cattle)
#Host#Juvenile

Safety information

risk assessment

  • @ref: 21076
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 21076
  • description: Chlamydia psittaci 02DC15, complete sequence
  • accession: NC_017292.1
  • length: 1172182
  • database: nuccore
  • NCBI tax ID: 1112254

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Chlamydia psittaci 02DC15GCA_000270425completencbi1112254
66792Chlamydia psittaci 02DC15GCA_000415545scaffoldncbi1112254
66792Chlamydia psittaci 02DC151112254.4wgspatric1112254
66792Chlamydia psittaci 02DC151112254.5completepatric1112254
66792Chlamydia psittaci 02DC15651053013completeimg1112254
66792Chlamydia psittaci 02DC152541047491draftimg1112254

GC content

  • @ref: 21076
  • GC-content: 39.1

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno69.224no
flagellatedno96.502no
gram-positiveno96.321no
anaerobicno62.74no
aerobicno91.07no
halophileyes60.184no
spore-formingno97.513no
thermophileno79.437yes
glucose-utilyes77.561no
glucose-fermentyes51.093no

External links

@ref: 21076

culture collection no.: DSM 27008

straininfo link

  • @ref: 87861
  • straininfo: 397161

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Genetics21705611Complete genome sequences of four mammalian isolates of Chlamydophila psittaci.Schofl G, Voigt A, Litsche K, Sachse K, Saluz HPJ Bacteriol10.1128/JB.05382-112011Animals, Base Sequence, Cattle, Cattle Diseases/microbiology, Chlamydophila psittaci/*genetics/isolation & purification, Genome, Bacterial, Humans, Mammals, Molecular Sequence Data, Psittacosis/microbiology/*veterinary, Sheep, Sheep Diseases/microbiology, Swine, Swine Diseases/microbiologyPathogenicity
25595025Identification of in vivo-induced bacterial protein antigens during calf infection with Chlamydia psittaci.Kastner J, Saluz HP, Hanel FInt J Med Microbiol10.1016/j.ijmm.2014.12.0222014Animals, Antigens, Bacterial/*biosynthesis/genetics, Bacterial Proteins/*biosynthesis/genetics, Cattle, Chlamydia Infections/microbiology/*veterinary, Chlamydophila psittaci/genetics/*physiology, *Gene Expression Profiling, *Gene Expression Regulation, Bacterial, Lung/microbiology, *Transcriptional Activation
Pathogenicity32848009Development of a Plasmid Shuttle Vector System for Genetic Manipulation of Chlamydia psittaci.Shima K, Weber MM, Schnee C, Sachse K, Kading N, Klinger M, Rupp JmSphere10.1128/mSphere.00787-202020Animals, Birds/microbiology, Chlamydophila psittaci/*genetics, Genetic Engineering/*methods, *Genetic Vectors, Green Fluorescent Proteins/genetics, HeLa Cells, Humans, Luminescent Proteins/genetics, Plasmids/*genetics, Psittacosis/microbiology/*veterinary

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21076Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-27008Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27008)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
87861Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID397161.1