Strain identifier

BacDive ID: 23811

Type strain: Yes

Species: Falsochrobactrum ovis

Strain Designation: B1315

Strain history: CIP <- 2012, P. Kämfper, Justus-Liebig Giessen Univ., Giessen, Germany: strain B1315

NCBI tax ID(s): 1293442 (species)

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General

@ref: 21282

BacDive-ID: 23811

DSM-Number: 26720

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped

description: Falsochrobactrum ovis B1315 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from placenta of a sheep with abortion.

NCBI tax id

  • NCBI tax id: 1293442
  • Matching level: species

strain history

@refhistory
21282<- P. Kämpfer, Univ. Giessen, Germany; B1315
121473CIP <- 2012, P. Kämfper, Justus-Liebig Giessen Univ., Giessen, Germany: strain B1315

doi: 10.13145/bacdive23811.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Brucellaceae
  • genus: Falsochrobactrum
  • species: Falsochrobactrum ovis
  • full scientific name: Falsochrobactrum ovis Kämpfer et al. 2013

@ref: 21282

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Brucellaceae

genus: Falsochrobactrum

species: Falsochrobactrum ovis

full scientific name: Falsochrobactrum ovis Kämpfer et al. 2013

strain designation: B1315

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
31007negative2 µm1 µmrod-shapedno
69480negative99.981
121473negativerod-shapedno

colony morphology

  • @ref: 21282
  • incubation period: 2-3 days

pigmentation

  • @ref: 31007
  • production: yes

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
39766MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
21282CASO AGAR (MERCK 105458) (DSMZ Medium 220)yesName: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled waterhttps://mediadive.dsmz.de/medium/220
121473CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
21282positivegrowth30mesophilic
39766positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 31007
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
31007no
69481no100
69480no99.995

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3100715963ribitol+carbon source
3100722599arabinose+carbon source
3100735391aspartate+carbon source
3100717057cellobiose+carbon source
3100728757fructose+carbon source
3100728260galactose+carbon source
3100717234glucose+carbon source
3100724996lactate+carbon source
3100729864mannitol+carbon source
3100737684mannose+carbon source
31007506227N-acetylglucosamine+carbon source
3100718257ornithine+carbon source
3100717272propionate+carbon source
3100715361pyruvate+carbon source
3100726546rhamnose+carbon source
3100733942ribose+carbon source
3100730911sorbitol+carbon source
3100718222xylose+carbon source
6836925115malate-assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate+assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine+assimilation
6836917634D-glucose+assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea+hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
21282catalase+1.11.1.6
21282cytochrome-c oxidase+1.9.3.1
31007cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease+3.5.1.5
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPAC
21282----+---++/-+/-+/-+-+-----

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentisolation date
21282placenta of a sheep with abortionGermanyDEUEurope
121473Placenta of sheep with abortion2009

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Caprinae (Sheep/Goat)
#Host Body-Site#Urogenital tract
#Host Body Product#Urogenital tract#Abort

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
212821Risk group (German classification)
1214731Risk group (French classification)

Sequence information

16S sequences

  • @ref: 21282
  • description: Falsochrobactrum ovis strain B1315 16S ribosomal RNA gene, partial sequence
  • accession: KC254733
  • length: 1458
  • database: ena
  • NCBI tax ID: 1293442

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Falsochrobactrum ovis DSM 26720GCA_003259955scaffoldncbi1293442
66792Falsochrobactrum ovis strain DSM 267201293442.3wgspatric1293442
66792Falsochrobactrum ovis DSM 267202756170233draftimg1293442

GC content

@refGC-contentmethod
2128245.09high performance liquid chromatography (HPLC)
3100745.09

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno91.299yes
flagellatedno96.468yes
gram-positiveno97.999yes
anaerobicno98.829yes
aerobicyes90.203yes
halophileno84.714no
spore-formingno96.067yes
glucose-utilyes80.595no
glucose-fermentno88.56yes
thermophileno95.427yes

External links

@ref: 21282

culture collection no.: DSM 26720, CCM 8460, LMG 27356, CIP 110569

straininfo link

  • @ref: 87841
  • straininfo: 382573

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny23687057Falsochrobactrum ovis gen. nov., sp. nov., isolated from a sheep.Kampfer P, Glaeser S, Busse HJ, Eisenberg T, Scholz HInt J Syst Evol Microbiol10.1099/ijs.0.049627-02013Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Female, Genes, Bacterial, Gram-Negative Aerobic Rods and Cocci/*classification/genetics/isolation & purification, Molecular Sequence Data, Phospholipids/analysis, *Phylogeny, Placenta/*microbiology, Pregnancy, Putrescine/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sheep, Domestic/*microbiology, Spermidine/analysis, Ubiquinone/analysisGenetics
Phylogeny30652966Falsochrobactrum shanghaiense sp. nov., isolated from paddy soil and emended description of the genus Falsochrobactrum.Sun L, Yao L, Gao X, Huang K, Bai N, Lyu W, Chen WInt J Syst Evol Microbiol10.1099/ijsem.0.0032362019Bacterial Typing Techniques, Base Composition, Brucellaceae/*classification/isolation & purification, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, Oryza/*microbiology, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Ubiquinone/*chemistryTranscriptome

Reference

@idauthorstitledoi/urlcatalogueID_cross_referencepubmedjournal
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21282Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-26720Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26720)
31007Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172733728776041
39766Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/8442
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa102533211880Nucleic Acids Res. 49: D498-D508 2020
68369Automatically annotated from API 20NE
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
87841Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID382573.1
121473Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110569Collection of Institut Pasteur (CIP 110569)