Strain identifier

BacDive ID: 23791

Type strain: No

Species: Bifidobacterium aesculapii

Strain history: P. Mattarelli MRM 4/2.

NCBI tax ID(s): 1329411 (species)

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General

@ref: 20462

BacDive-ID: 23791

DSM-Number: 26738

keywords: 16S sequence, Bacteria, anaerobe, mesophilic

description: Bifidobacterium aesculapii DSM 26738 is an anaerobe, mesophilic bacterium that was isolated from marmoset feces, Callithrix jacchus.

NCBI tax id

  • NCBI tax id: 1329411
  • Matching level: species

strain history

@refhistory
20462<- P. Mattarelli, Univ. Bologna, Dept. Agricultural Scs., Italy; MRM 4/2 <- M. Modesto
67770P. Mattarelli MRM 4/2.

doi: 10.13145/bacdive23791.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Bifidobacteriales
  • family: Bifidobacteriaceae
  • genus: Bifidobacterium
  • species: Bifidobacterium aesculapii
  • full scientific name: Bifidobacterium aesculapii Modesto et al. 2014

@ref: 20462

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Bifidobacteriales

family: Bifidobacteriaceae

genus: Bifidobacterium

species: Bifidobacterium aesculapii

full scientific name: Bifidobacterium aesculapii Modesto et al. 2014

type strain: no

Culture and growth conditions

culture medium

  • @ref: 20462
  • name: BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/58
  • composition: Name: BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58) Composition: Glucose 10.0 g/l Casein peptone 10.0 g/l Bacto Soytone 5.0 g/l Meat extract 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l MnSO4 x H2O 0.05 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Tween 80 Resazurin Distilled water

culture temp

@refgrowthtypetemperaturerange
20462positivegrowth37mesophilic
67770positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 20462
  • oxygen tolerance: anaerobe

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate+builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose+builds acid from32528
68371gentiobiose+builds acid from28066
68371xylitol-builds acid from17151
68371glycogen+builds acid from28087
68371starch+builds acid from28017
68371trehalose+builds acid from27082
68371sucrose+builds acid from17992
68371melibiose-builds acid from28053
68371lactose+builds acid from17716
68371maltose+builds acid from17306
68371cellobiose-builds acid from17057
68371salicin+builds acid from17814
68371esculin+builds acid from4853
68371arbutin+builds acid from18305
68371amygdalin+builds acid from27613
68371N-acetylglucosamine+builds acid from59640
68371methyl alpha-D-glucopyranoside+builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol+builds acid from17924
68371D-mannitol+builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose-builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose+builds acid from65327
68371D-ribose+builds acid from16988
68371L-arabinose+builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754

API 50CHac

@refQGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
20462----+++---+++-----++-++++++-++-+++/-+/-+/-++-++------+--

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountryorigin.countrycontinent
20462marmoset feces, Callithrix jacchusCallithrix jacchusAptuit, VeronaItalyITAEurope
67770Fecal samples of infant common marmosets (Callithrix jacchus)Callithrix jacchus

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Primates
#Host Body Product#Gastrointestinal tract#Feces (Stool)

taxonmaps

  • @ref: 69479
  • File name: preview.99_137118.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_24;96_52951;97_68267;98_91388;99_137118&stattab=map
  • Last taxonomy: Bifidobacterium aesculapii subclade
  • 16S sequence: KC807990
  • Sequence Identity:
  • Total samples: 18509
  • soil counts: 44
  • aquatic counts: 176
  • animal counts: 18246
  • plant counts: 43

Safety information

risk assessment

  • @ref: 20462
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 67770
  • description: Bifidobacterium aesculapii strain MRM 4/2 16S ribosomal RNA gene, partial sequence
  • accession: KC807990
  • length: 1422
  • database: ena
  • NCBI tax ID: 1329411

External links

@ref: 20462

culture collection no.: DSM 26738, JCM 18762, MRM 4/2

straininfo link

  • @ref: 87822
  • straininfo: 399429

literature

  • topic: Phylogeny
  • Pubmed-ID: 24867172
  • title: Bifidobacterium aesculapii sp. nov., from the faeces of the baby common marmoset (Callithrix jacchus).
  • authors: Modesto M, Michelini S, Stefanini I, Ferrara A, Tacconi S, Biavati B, Mattarelli P
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.056937-0
  • year: 2014
  • mesh: Aldehyde-Lyases/chemistry, Animals, Bacterial Typing Techniques, Base Composition, Bifidobacterium/*classification/genetics/isolation & purification, Callithrix/*microbiology, DNA, Bacterial/genetics, Feces/*microbiology, Genes, Bacterial, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20462Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-26738Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26738)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
87822Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID399429.1