Strain identifier
BacDive ID: 23784
Type strain: 
Species: Bartonella pachyuromydis
Strain Designation: FN15-2
Strain history: <- S Maruyama, Nihon Univ., Japan
NCBI tax ID(s): 931097 (species)
version 8.1 (current version)
General
@ref: 20454
BacDive-ID: 23784
DSM-Number: 28563
keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, ovoid-shaped, animal pathogen
description: Bartonella pachyuromydis FN15-2 is an aerobe, mesophilic, Gram-negative animal pathogen that was isolated from blood of fat-tailed gerbil Pachyuromys duprasi; imported pet.
NCBI tax id
- NCBI tax id: 931097
- Matching level: species
strain history
| @ref | history |
|---|---|
| 20454 | <- KCTC <- S. Sato; FN15-2 |
| 67770 | S. Sato FN15-2. |
| 67771 | <- S Maruyama, Nihon Univ., Japan |
doi: 10.13145/bacdive23784.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Bartonellaceae
- genus: Bartonella
- species: Bartonella pachyuromydis
- full scientific name: Bartonella pachyuromydis Sato et al. 2013
@ref: 20454
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Bartonellaceae
genus: Bartonella
species: Bartonella pachyuromydis
full scientific name: Bartonella pachyuromydis Sato et al. 2013
strain designation: FN15-2
type strain: yes
Morphology
cell morphology
| @ref | gram stain | cell length | cell width | cell shape | motility |
|---|---|---|---|---|---|
| 30683 | negative | 1.35 µm | 0.59 µm | ovoid-shaped | |
| 67771 | no | ||||
| 67771 | negative |
colony morphology
- @ref: 20454
- incubation period: 3-7 days
pigmentation
- @ref: 30683
- production: yes
Culture and growth conditions
culture medium
- @ref: 20454
- name: COLUMBIA BLOOD AGAR (DSMZ Medium 429)
- growth: yes
- link: https://mediadive.dsmz.de/medium/429
- composition: Name: COLUMBIA BLOOD AGAR (DSMZ Medium 429; with strain-specific modifications) Composition: Horse blood 100.0 g/l Columbia agar base
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 20454 | positive | growth | 37 | mesophilic |
| 30683 | positive | optimum | 35 | mesophilic |
| 67770 | positive | growth | 35 | mesophilic |
| 67771 | positive | growth | 35 | mesophilic |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance |
|---|---|
| 30683 | aerobe |
| 67771 | microaerophile |
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 30683 | 29016 | arginine | + | carbon source |
| 30683 | 15428 | glycine | + | carbon source |
| 30683 | 25017 | leucine | + | carbon source |
| 30683 | 26271 | proline | + | carbon source |
| 30683 | 16296 | D-tryptophan | + | carbon source |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 20454 | catalase | - | 1.11.1.6 |
| 20454 | cytochrome-c oxidase | - | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | host species | country | origin.country | continent |
|---|---|---|---|---|---|
| 20454 | blood of fat-tailed gerbil Pachyuromys duprasi; imported pet | Pachyuromys duprasi | Japan | JPN | Asia |
| 67770 | Blood of fat-tail gerbil (Pachyuromys duprasi) | Pachyuromys duprasi | |||
| 67771 | From blood of fat-tailed gerbil, `Pachyuromys duprasi` | Japan | JPN | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Mammals | #Muridae (Mouse/Rat) |
| #Host Body Product | #Fluids | #Blood |
taxonmaps
- @ref: 69479
- File name: preview.99_1245.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_247;97_656;98_758;99_1245&stattab=map
- Last taxonomy: Bartonella
- 16S sequence: AB602531
- Sequence Identity:
- Total samples: 172
- soil counts: 29
- aquatic counts: 22
- animal counts: 118
- plant counts: 3
Safety information
risk assessment
- @ref: 20454
- pathogenicity animal: yes, in single cases
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20454
- description: Bartonella pachyuromydis gene for 16S rRNA, partial sequence, strain: FN15-2
- accession: AB602531
- length: 1350
- database: ena
- NCBI tax ID: 931097
GC content
- @ref: 20454
- GC-content: 35.7
External links
@ref: 20454
culture collection no.: DSM 28563, JCM 17714, KCTC 23657
straininfo link
- @ref: 87816
- straininfo: 399896
literature
- topic: Phylogeny
- Pubmed-ID: 22941296
- title: Bartonella jaculi sp. nov., Bartonella callosciuri sp. nov., Bartonella pachyuromydis sp. nov. and Bartonella acomydis sp. nov., isolated from wild Rodentia.
- authors: Sato S, Kabeya H, Fujinaga Y, Inoue K, Une Y, Yoshikawa Y, Maruyama S
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.041939-0
- year: 2012
- mesh: Animals, Bacterial Typing Techniques, Bartonella/*classification/genetics/isolation & purification, Base Composition, DNA, Bacterial/genetics, Egypt, Genes, Bacterial, Molecular Sequence Data, Netherlands, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rodentia/*microbiology, Sequence Analysis, DNA, Thailand
- topic2: Genetics
Reference
| @id | authors | title | doi/url | catalogue | ID_cross_reference | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 20454 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-28563 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28563) | |||
| 30683 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 27014 | 28776041 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
| 87816 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID399896.1 |