Strain identifier

BacDive ID: 2358

Type strain: No

Species: Cellulomonas uda

Strain history: CIP <- 1986, DSM <- ATCC <- V.R. Srinivasan, Cellulomonas sp.

NCBI tax ID(s): 1714 (species)

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General

@ref: 8533

BacDive-ID: 2358

DSM-Number: 20108

keywords: Bacteria, facultative anaerobe, mesophilic, Gram-positive, rod-shaped

description: Cellulomonas uda DSM 20108 is a facultative anaerobe, mesophilic, Gram-positive bacterium that was isolated from sugarcane field.

NCBI tax id

  • NCBI tax id: 1714
  • Matching level: species

strain history

@refhistory
8533<- ATCC <- V.R. Srinivasan (Cellulomonas sp.)
123707CIP <- 1986, DSM <- ATCC <- V.R. Srinivasan, Cellulomonas sp.

doi: 10.13145/bacdive2358.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Cellulomonadaceae
  • genus: Cellulomonas
  • species: Cellulomonas uda
  • full scientific name: Cellulomonas uda (Kellerman et al. 1913) Bergey et al. 1923 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Bacterium udum

@ref: 8533

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Cellulomonadaceae

genus: Cellulomonas

species: Cellulomonas uda

full scientific name: Cellulomonas uda (Kellerman et al. 1913) Bergey et al. 1923

type strain: no

Morphology

cell morphology

  • @ref: 123707
  • gram stain: positive
  • cell shape: rod-shaped
  • motility: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
8533CORYNEBACTERIUM AGAR (DSMZ Medium 53)yeshttps://mediadive.dsmz.de/medium/53Name: CORYNEBACTERIUM AGAR (DSMZ Medium 53) Composition: Agar 15.0 g/l Casein peptone 10.0 g/l NaCl 5.0 g/l Glucose 5.0 g/l Yeast extract 5.0 g/l Distilled water
37090MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
123707CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3
123707CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
8533positivegrowth30mesophilic
37090positivegrowth30mesophilic
47917positivegrowth22-42

Physiology and metabolism

oxygen tolerance

  • @ref: 123707
  • oxygen tolerance: facultative anaerobe

compound production

@refcompound
8533cellulase
8533protein

murein

  • @ref: 8533
  • murein short key: A21.05
  • type: A4ß L-Orn-D-Glu

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose+builds acid from62318
68371turanose+builds acid from32528
68371gentiobiose+builds acid from28066
68371xylitol-builds acid from17151
68371glycogen+builds acid from28087
68371starch+builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose+builds acid from27082
68371sucrose+builds acid from17992
68371melibiose-builds acid from28053
68371lactose+builds acid from17716
68371maltose+builds acid from17306
68371cellobiose+builds acid from17057
68371salicin+builds acid from17814
68371esculin+builds acid from4853
68371arbutin+builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose+builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose+builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol+builds acid from17754
123707nitrate+reduction17632
123707nitrite-reduction16301

metabolite production

  • @ref: 123707
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382beta-glucosidase+3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase+3.2.1.23
68382alpha-galactosidase+3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase-3.1.3.2
68382alpha-chymotrypsin+3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)-
68382esterase (C 4)+
68382alkaline phosphatase-3.1.3.1
123707oxidase+
123707catalase+1.11.1.6
123707urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
123707--+--+---+-+++-+++--

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
123707+--+-+---+++/-+----------++++++-++---++-+++--------

Isolation, sampling and environmental information

isolation

@refsample type
8533sugarcane field
47917Sugarcane field
123707Environment, Sugarcane field

isolation source categories

Cat1Cat2Cat3
#Engineered#Agriculture#Field
#Host#Plants#Herbaceous plants (Grass,Crops)

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
85331Risk group (German classification)
1237071Risk group (French classification)

Sequence information

GC content

  • @ref: 8533
  • GC-content: 76.3

External links

@ref: 8533

culture collection no.: DSM 20108, ATCC 21399, NCIB 11494, CCUG 24088, CIP 102088, NCIMB 11494

straininfo link

  • @ref: 71913
  • straininfo: 7904

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Metabolism18553770Microcalorimetric study of cellulose degradation by Cellulomonas uda ATCC 21399.Dermoun Z, Belaich JPBiotechnol Bioeng10.1002/bit.2602707111985
Metabolism27154570Aerobic and anaerobic cellulase production by Cellulomonas uda.Poulsen HV, Willink FW, Ingvorsen KArch Microbiol10.1007/s00203-016-1230-82016Biofuels/*microbiology, Bioreactors/*microbiology, Cellobiose/metabolism, Cellulase/biosynthesis/*metabolism, Cellulomonas/*metabolism, Cellulose/*metabolism, Fermentation/physiology, Glucose/metabolism, Oxygen/*metabolismBiotechnology

Reference

@idauthorscataloguedoi/urltitle
8533Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20108)https://www.dsmz.de/collection/catalogue/details/culture/DSM-20108
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
37090Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/13735
47917Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 24088)https://www.ccug.se/strain?id=24088
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
71913Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID7904.1StrainInfo: A central database for resolving microbial strain identifiers
123707Curators of the CIPCollection of Institut Pasteur (CIP 102088)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20102088