Strain identifier
BacDive ID: 23579
Type strain: 
Species: Aurantimonas sp.
Strain Designation: V4.Mo.17
Strain history: <- I. Fritz; V4.Mo.17. Deposited as Thetysia sp.
NCBI tax ID(s): 2735890 (species)
version 8.1 (current version)
General
@ref: 5705
BacDive-ID: 23579
DSM-Number: 15092
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative
description: Aurantimonas sp. V4.Mo.17 is a mesophilic, Gram-negative bacterium that was isolated from seewater sample.
NCBI tax id
- NCBI tax id: 2735890
- Matching level: species
strain history
- @ref: 5705
- history: <- I. Fritz; V4.Mo.17. Deposited as Thetysia sp.
doi: 10.13145/bacdive23579.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Aurantimonadaceae
- genus: Aurantimonas
- species: Aurantimonas sp.
- full scientific name: Aurantimonas Denner et al. 2003
@ref: 5705
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Aurantimonadaceae
genus: Aurantimonas
species: Aurantimonas sp.
full scientific name: Aurantimonas sp.
strain designation: V4.Mo.17
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.993
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 5705 | HETEROTROPHIC MEDIUM H3P (DSMZ Medium 428) | yes | https://mediadive.dsmz.de/medium/428 | Name: HETEROTROPHIC MEDIUM H3P (DSMZ Medium 428) Composition: Agar 19.802 g/l Na2HPO4 x 2 H2O 2.87129 g/l KH2PO4 2.27723 g/l D-Glucose 1.9802 g/l Na-lactate 0.990099 g/l Na-pyruvate 0.990099 g/l D-Mannitol 0.990099 g/l DL-Malate 0.990098 g/l Na-acetate 0.990098 g/l Yeast extract 0.990098 g/l NH4Cl 0.990098 g/l Disodium succinate 0.990098 g/l MgSO4 x 7 H2O 0.495049 g/l Ferric ammonium citrate 0.049505 g/l CaCl2 x 2 H2O 0.00990098 g/l NaVO3 x H2O 0.00495049 g/l Thiamine-HCl x 2 H2O 0.00247525 g/l Nicotinic acid 0.00247525 g/l Pyridoxine hydrochloride 0.00247525 g/l Calcium pantothenate 0.00247525 g/l H3BO3 0.00148515 g/l CoCl2 x 6 H2O 0.000990099 g/l Riboflavin 0.00049505 g/l ZnSO4 x 7 H2O 0.00049505 g/l MnCl2 x 4 H2O 0.000148515 g/l Na2MoO4 x 2 H2O 0.000148515 g/l NiCl2 x 6 H2O 9.90099e-05 g/l CuCl2 x 2 H2O 4.95049e-05 g/l Vitamin B12 4.95049e-05 g/l Folic acid 9.90099e-06 g/l Biotin 4.9505e-06 g/l Distilled water |
| 5705 | NMS MEDIUM (DSMZ Medium 632) | yes | https://mediadive.dsmz.de/medium/632 | Name: NMS MEDIUM (DSMZ Medium 632) Composition: Agar 12.5 g/l MgSO4 x 7 H2O 1.0 g/l KNO3 1.0 g/l Methanol 0.792 g/l Na2HPO4 x 12 H2O 0.717 g/l KH2PO4 0.272 g/l CaCl2 x 6 H2O 0.2 g/l Fe(III)NH4-EDTA 0.004 g/l Na2-EDTA 0.00025 g/l FeSO4 x 7 H2O 0.0001 g/l H3BO3 1.5e-05 g/l CoCl2 x 6 H2O 1e-05 g/l ZnSO4 x 7 H2O 5e-06 g/l MnCl2 x 4 H2O 1.5e-06 g/l Na2MoO4 x 2 H2O 1.5e-06 g/l NiCl2 x 6 H2O 1e-06 g/l CaCl2 x 2 H2O 5e-07 g/l Distilled water |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 5705 | positive | growth | 28-30 | mesophilic |
| 5705 | positive | growth | 25-30 | mesophilic |
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.996 |
Isolation, sampling and environmental information
isolation
- @ref: 5705
- sample type: seewater sample
- geographic location: Nizza
- country: France
- origin.country: FRA
- continent: Europe
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #Marine
taxonmaps
- @ref: 69479
- File name: preview.99_5545.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_2285;97_3288;98_4138;99_5545&stattab=map
- Last taxonomy: Aurantimonas
- 16S sequence: AJ508754
- Sequence Identity:
- Total samples: 22934
- soil counts: 5164
- aquatic counts: 11367
- animal counts: 4169
- plant counts: 2234
Sequence information
16S sequences
- @ref: 5705
- description: Marine alpha proteobacterium V4.MO.17 partial 16S rRNA gene, strain V4.MO.17
- accession: AJ508754
- length: 1442
- database: ena
- NCBI tax ID: 208554
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Aurantimonas sp. DSM 15092 | 2735890.3 | wgs | patric | 2735890 |
| 66792 | Aurantimonas sp. DSM 15092 | 2861244144 | draft | img | 2735890 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | yes | 87.338 | no |
| gram-positive | no | 97.559 | no |
| anaerobic | no | 97.312 | no |
| halophile | no | 68.162 | no |
| spore-forming | no | 95.511 | no |
| glucose-util | yes | 92.401 | no |
| flagellated | no | 50 | no |
| aerobic | yes | 90.216 | no |
| thermophile | no | 97.437 | yes |
| glucose-ferment | no | 91.103 | no |
External links
@ref: 5705
culture collection no.: DSM 15092
straininfo link
- @ref: 87671
- straininfo: 143354
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 5705 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15092) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-15092 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
| 87671 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID143354.1 | StrainInfo: A central database for resolving microbial strain identifiers |