Strain identifier

BacDive ID: 23545

Type strain: Yes

Species: Aeromonas cavernicola

Strain history: <- A. Martinez-Murcia, Molecular Diagnostics Center, Orihuela (Alicante), Spain; MDC 2508 <- I. Sedlácek, CCM

NCBI tax ID(s): 647 (species)

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General

@ref: 20265

BacDive-ID: 23545

DSM-Number: 24474

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, motile

description: Aeromonas cavernicola DSM 24474 is a mesophilic, motile bacterium that was isolated from brook water in a cavern.

NCBI tax id

  • NCBI tax id: 647
  • Matching level: species

strain history

  • @ref: 20265
  • history: <- A. Martinez-Murcia, Molecular Diagnostics Center, Orihuela (Alicante), Spain; MDC 2508 <- I. Sedlácek, CCM

doi: 10.13145/bacdive23545.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Aeromonadales
  • family: Aeromonadaceae
  • genus: Aeromonas
  • species: Aeromonas cavernicola
  • full scientific name: Aeromonas cavernicola Martínez-Murcia et al. 2013

@ref: 20265

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Aeromonadales

family: Aeromonadaceae

genus: Aeromonas

species: Aeromonas sp.

full scientific name: Aeromonas sp.

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes99.032
6948099.993negative

multimedia

  • @ref: 20265
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_24474.jpg
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

  • @ref: 20265
  • name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/535
  • composition: Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

culture temp

  • @ref: 20265
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.953

Isolation, sampling and environmental information

isolation

  • @ref: 20265
  • sample type: brook water in a cavern
  • geographic location: Moravia region, Rudice
  • country: Czech Republic
  • origin.country: CZE
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Cave water
#Environmental#Aquatic#River (Creek)

Sequence information

16S sequences

  • @ref: 20265
  • description: Aeromonas cavernicola strain MDC 2508 16S ribosomal RNA gene, partial sequence
  • accession: HQ436040
  • length: 1503
  • database: ena
  • NCBI tax ID: 1006623

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Aeromonas cavernicola DSM 24474GCA_002795305contigncbi1006623
66792Aeromonas cavernicola strain MDC 25081006623.3wgspatric1006623
66792Aeromonas cavernicola MDC 25082791355211draftimg1006623

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes89.022no
flagellatedyes79.557no
gram-positiveno98.846no
anaerobicno97.668no
aerobicyes82.438no
halophileno85.798no
spore-formingno95.321no
thermophileno98.342yes
glucose-utilyes91.246no
glucose-fermentyes85.443no

External links

@ref: 20265

culture collection no.: DSM 24474, CCM 7641, CECT 7862, MDC 2508

straininfo link

  • @ref: 87641
  • straininfo: 394920

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny23129345Aeromonas cavernicola sp. nov., isolated from fresh water of a brook in a cavern.Martinez-Murcia A, Beaz-Hidalgo R, Svec P, Saavedra MJ, Figueras MJ, Sedlacek ICurr Microbiol10.1007/s00284-012-0253-x2012Aeromonas/*classification/genetics/*isolation & purification/physiology, Bacterial Proteins/genetics, Bacterial Typing Techniques, Caves, Cluster Analysis, Czech Republic, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fresh Water/*microbiology, Microscopy, Electron, Transmission, Molecular Sequence Data, Molecular Typing, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNAGenetics
Phylogeny29650571Draft Genome Sequence of Aeromonas cavernicola sp. nov. DSM 24474(T), Isolated from a Cavern Brook in the Moravia Region of the Czech Republic.Colston SM, Navarro A, Martinez-Murcia AJ, Graf JGenome Announc10.1128/genomeA.00227-182018Genetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20265Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-24474Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24474)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
87641Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID394920.1