Strain identifier

BacDive ID: 23517

Type strain: Yes

Species: Terriglobus tenax

Strain Designation: DRP-35

Strain history: <- NBRC <- K.-S. Whang, Mokwon Univ., College of Science & Technol., Daejeon, Korea; DRP-35

NCBI tax ID(s): 1111115 (species)

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General

@ref: 20860

BacDive-ID: 23517

DSM-Number: 28898

keywords: 16S sequence, Bacteria, mesophilic

description: Terriglobus tenax DRP-35 is a mesophilic bacterium that was isolated from rhizosphere soil of dong quai Angelica sinensis.

NCBI tax id

  • NCBI tax id: 1111115
  • Matching level: species

strain history

  • @ref: 20860
  • history: <- NBRC <- K.-S. Whang, Mokwon Univ., College of Science & Technol., Daejeon, Korea; DRP-35

doi: 10.13145/bacdive23517.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/acidobacteriota
  • domain: Bacteria
  • phylum: Acidobacteriota
  • class: Terriglobia
  • order: Terriglobales
  • family: Acidobacteriaceae
  • genus: Terriglobus
  • species: Terriglobus tenax
  • full scientific name: Terriglobus tenax Whang et al. 2014

@ref: 20860

domain: Bacteria

phylum: Acidobacteria

class: Acidobacteriia

order: Acidobacteriales

family: Acidobacteriaceae

genus: Terriglobus

species: Terriglobus tenax

full scientific name: Terriglobus tenax Whang et al. 2014

strain designation: DRP-35

type strain: yes

Morphology

colony morphology

  • @ref: 20860
  • incubation period: 3-7 days

Culture and growth conditions

culture medium

  • @ref: 20860
  • name: R2A MEDIUM (DSMZ Medium 830)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/830
  • composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

culture temp

  • @ref: 20860
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836927689decanoate-assimilation
6836924265gluconate+assimilation
6836917306maltose+assimilation
6836959640N-acetylglucosamine+assimilation
6836916899D-mannitol+assimilation
6836916024D-mannose+assimilation
6836930849L-arabinose+assimilation
6836917634D-glucose+assimilation
683695291gelatin-hydrolysis
683694853esculin+hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
20860catalase+1.11.1.6
20860cytochrome-c oxidase-1.9.3.1
68369cytochrome oxidase-1.9.3.1
68369gelatinase-
68369beta-glucosidase+3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
20860-----+-++++++++-+/-+/-+/-+/--

Isolation, sampling and environmental information

isolation

  • @ref: 20860
  • sample type: rhizosphere soil of dong quai Angelica sinensis
  • host species: Angelica sinensis
  • geographic location: Chungnam, Geumsan
  • country: Republic of Korea
  • origin.country: KOR
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Rhizosphere

taxonmaps

  • @ref: 69479
  • File name: preview.99_34857.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_236;96_1244;97_20563;98_25726;99_34857&stattab=map
  • Last taxonomy: Terriglobus tenax
  • 16S sequence: JN543507
  • Sequence Identity:
  • Total samples: 912
  • soil counts: 436
  • aquatic counts: 71
  • animal counts: 90
  • plant counts: 315

Safety information

risk assessment

  • @ref: 20860
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20860
  • description: Terriglobus tenax strain DRP 35 16S ribosomal RNA gene, partial sequence
  • accession: JN543507
  • length: 1440
  • database: ena
  • NCBI tax ID: 1111115

GC content

  • @ref: 20860
  • GC-content: 62.1

External links

@ref: 20860

culture collection no.: DSM 28898, KACC 16474, NBRC 109677, DRP 35

straininfo link

  • @ref: 87624
  • straininfo: 402707

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny24096353Terriglobus tenax sp. nov., an exopolysaccharide-producing acidobacterium isolated from rhizosphere soil of a medicinal plant.Whang KS, Lee JC, Lee HR, Han SI, Chung SHInt J Syst Evol Microbiol10.1099/ijs.0.053769-02013Acidobacteria/*classification/genetics/isolation & purification, Angelica sinensis/*microbiology, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Phosphatidylethanolamines/chemistry, Phospholipids/chemistry, *Phylogeny, Plants, Medicinal/microbiology, RNA, Ribosomal, 16S/genetics, Republic of Korea, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistryGenetics
Phylogeny26297491Terriglobus albidus sp. nov., a member of the family Acidobacteriaceae isolated from Namibian semiarid savannah soil.Pascual J, Wust PK, Geppert A, Foesel BU, Huber KJ, Overmann JInt J Syst Evol Microbiol10.1099/ijsem.0.0004112015Acidobacteria/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Grassland, Molecular Sequence Data, Namibia, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/chemistryGenetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20860Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-28898Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28898)
68369Automatically annotated from API 20NE
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
87624Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID402707.1