Strain identifier

BacDive ID: 23489

Type strain: Yes

Species: Acetobacter lambici

Strain Designation: R-49742

Strain history: <- P. Vandamme, Lab. Microbiology, Ghent Univ., Belgium; R-49742 <- F. Spitaels

NCBI tax ID(s): 1332824 (species)

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General

@ref: 20230

BacDive-ID: 23489

DSM-Number: 27328

keywords: genome sequence, 16S sequence, Bacteria, Gram-negative

description: Acetobacter lambici R-49742 is a Gram-negative bacterium that was isolated from fermenting lambic beer.

NCBI tax id

  • NCBI tax id: 1332824
  • Matching level: species

strain history

  • @ref: 20230
  • history: <- P. Vandamme, Lab. Microbiology, Ghent Univ., Belgium; R-49742 <- F. Spitaels

doi: 10.13145/bacdive23489.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodospirillales
  • family: Acetobacteraceae
  • genus: Acetobacter
  • species: Acetobacter lambici
  • full scientific name: Acetobacter lambici Spitaels et al. 2014

@ref: 20230

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Acetobacteraceae

genus: Acetobacter

species: Acetobacter lambici

full scientific name: Acetobacter lambici Spitaels et al. 2014

strain designation: R-49742

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 97.013

Culture and growth conditions

culture medium

  • @ref: 20230
  • name: ACETOBACTER LAMBICUS MEDIUM (DSMZ Medium 1522)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1522
  • composition: Name: ACETOBACTER LAMBICUS MEDIUM (DSMZ Medium 1522) Composition: Peptone 15.0 g/l Glucose 10.0 g/l Yeast extract 8.0 g/l Acetic acid Ethanol Distilled water

culture temp

  • @ref: 20230
  • growth: positive
  • type: growth
  • temperature: 28

Physiology and metabolism

spore formation

@refspore formationconfidence
69480no94.159
69481no100

Isolation, sampling and environmental information

isolation

  • @ref: 20230
  • sample type: fermenting lambic beer
  • geographic location: Flanders
  • country: Belgium
  • origin.country: BEL
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Engineered#Food production#Fermented
#Engineered#Food production#Beverage

taxonmaps

  • @ref: 69479
  • File name: preview.99_1246.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_29;96_152;97_163;98_985;99_1246&stattab=map
  • Last taxonomy: Acetobacter
  • 16S sequence: HF969863
  • Sequence Identity:
  • Total samples: 3246
  • soil counts: 352
  • aquatic counts: 428
  • animal counts: 2157
  • plant counts: 309

Safety information

risk assessment

  • @ref: 20230
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20230
  • description: Acetobacter lambici partial 16S rRNA gene, strain LMG 27439
  • accession: HF969863
  • length: 1442
  • database: nuccore
  • NCBI tax ID: 1332824

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Acetobacter lambici LMG 27439GCA_011516885contigncbi1332824
66792Acetobacter lambici strain LMG 274391332824.3wgspatric1332824

GC content

  • @ref: 20230
  • GC-content: 56.2
  • method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes71.124no
gram-positiveno97.013no
anaerobicno98.236no
halophileno88.213no
spore-formingno94.159no
glucose-utilyes70.529no
aerobicyes87.023no
flagellatedno81.777no
thermophileno95yes
glucose-fermentno90.119no

External links

@ref: 20230

culture collection no.: DSM 27328, LMG 27439

straininfo link

  • @ref: 87610
  • straininfo: 388270

literature

  • topic: Phylogeny
  • Pubmed-ID: 24363299
  • title: Acetobacter lambici sp. nov., isolated from fermenting lambic beer.
  • authors: Spitaels F, Li L, Wieme A, Balzarini T, Cleenwerck I, Van Landschoot A, De Vuyst L, Vandamme P
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.057315-0
  • year: 2013
  • mesh: Acetobacter/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Beer/*microbiology, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Fermentation, Genes, Bacterial, Gluconates/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20230Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-27328Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27328)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
87610Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID388270.1