Strain identifier
BacDive ID: 23489
Type strain: 
Species: Acetobacter lambici
Strain Designation: R-49742
Strain history: <- P. Vandamme, Lab. Microbiology, Ghent Univ., Belgium; R-49742 <- F. Spitaels
NCBI tax ID(s): 1332824 (species)
version 8.1 (current version)
General
@ref: 20230
BacDive-ID: 23489
DSM-Number: 27328
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative
description: Acetobacter lambici R-49742 is a mesophilic, Gram-negative bacterium that was isolated from fermenting lambic beer.
NCBI tax id
- NCBI tax id: 1332824
- Matching level: species
strain history
- @ref: 20230
- history: <- P. Vandamme, Lab. Microbiology, Ghent Univ., Belgium; R-49742 <- F. Spitaels
doi: 10.13145/bacdive23489.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodospirillales
- family: Acetobacteraceae
- genus: Acetobacter
- species: Acetobacter lambici
- full scientific name: Acetobacter lambici Spitaels et al. 2014
@ref: 20230
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Acetobacteraceae
genus: Acetobacter
species: Acetobacter lambici
full scientific name: Acetobacter lambici Spitaels et al. 2014
strain designation: R-49742
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.998
Culture and growth conditions
culture medium
- @ref: 20230
- name: ACETOBACTER LAMBICUS MEDIUM (DSMZ Medium 1522)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1522
- composition: Name: ACETOBACTER LAMBICUS MEDIUM (DSMZ Medium 1522) Composition: Peptone 15.0 g/l Glucose 10.0 g/l Yeast extract 8.0 g/l Acetic acid Ethanol Distilled water
culture temp
- @ref: 20230
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.988 |
Isolation, sampling and environmental information
isolation
- @ref: 20230
- sample type: fermenting lambic beer
- geographic location: Flanders
- country: Belgium
- origin.country: BEL
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Food production | #Fermented |
| #Engineered | #Food production | #Beverage |
taxonmaps
- @ref: 69479
- File name: preview.99_1246.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_29;96_152;97_163;98_985;99_1246&stattab=map
- Last taxonomy: Acetobacter
- 16S sequence: HF969863
- Sequence Identity:
- Total samples: 3246
- soil counts: 352
- aquatic counts: 428
- animal counts: 2157
- plant counts: 309
Safety information
risk assessment
- @ref: 20230
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20230
- description: Acetobacter lambici partial 16S rRNA gene, strain LMG 27439
- accession: HF969863
- length: 1442
- database: ena
- NCBI tax ID: 1332824
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Acetobacter lambici LMG 27439 | GCA_011516885 | contig | ncbi | 1332824 |
| 66792 | Acetobacter lambici strain LMG 27439 | 1332824.3 | wgs | patric | 1332824 |
GC content
- @ref: 20230
- GC-content: 56.2
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | yes | 71.124 | no |
| gram-positive | no | 97.013 | no |
| anaerobic | no | 98.236 | no |
| halophile | no | 88.213 | no |
| spore-forming | no | 94.159 | no |
| glucose-util | yes | 70.529 | no |
| aerobic | yes | 87.023 | no |
| flagellated | no | 81.777 | no |
| thermophile | no | 95 | yes |
| glucose-ferment | no | 90.119 | no |
External links
@ref: 20230
culture collection no.: DSM 27328, LMG 27439
straininfo link
- @ref: 87610
- straininfo: 388270
literature
- topic: Phylogeny
- Pubmed-ID: 24363299
- title: Acetobacter lambici sp. nov., isolated from fermenting lambic beer.
- authors: Spitaels F, Li L, Wieme A, Balzarini T, Cleenwerck I, Van Landschoot A, De Vuyst L, Vandamme P
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.057315-0
- year: 2013
- mesh: Acetobacter/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Beer/*microbiology, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Fermentation, Genes, Bacterial, Gluconates/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
- topic2: Genetics
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 20230 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-27328 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27328) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 87610 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID388270.1 |