Strain identifier

BacDive ID: 23432

Type strain: No

Species: Jidongwangia harbinensis

Strain Designation: NEAU-J3

Strain history: <- C. Liu, School of Life Science, Harbin, China NEAU-J3 <- F. Jia, School of Life Science, Harbin, China

NCBI tax ID(s): 1176194 (species)

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General

@ref: 19024

BacDive-ID: 23432

DSM-Number: 45747

keywords: 16S sequence, Bacteria, mesophilic

description: Jidongwangia harbinensis NEAU-J3 is a mesophilic bacterium that was isolated from surface sterilized soybean root Merr).

NCBI tax id

  • NCBI tax id: 1176194
  • Matching level: species

strain history

  • @ref: 19024
  • history: <- C. Liu, School of Life Science, Harbin, China NEAU-J3 <- F. Jia, School of Life Science, Harbin, China

doi: 10.13145/bacdive23432.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micromonosporales
  • family: Micromonosporaceae
  • genus: Jidongwangia
  • species: Jidongwangia harbinensis
  • full scientific name: Jidongwangia harbinensis Han et al. 2023

  • synonyms

    • @ref: 20215
    • synonym: Wangella harbinensis

@ref: 19024

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Micromonosporaceae

genus: Wangella

species: Wangella harbinensis

full scientific name: Wangella harbinensis Jia et al. 2013

strain designation: NEAU-J3

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
19024N-Z-AMINE-MEDIUM (DSMZ Medium 554)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium554.pdf
19024GPHF-MEDIUM (DSMZ Medium 553)yeshttps://mediadive.dsmz.de/medium/553Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water

culture temp

  • @ref: 19024
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 19024
  • sample type: surface sterilized soybean root (Glycine max (L.) Merr)
  • host species: Glycine max
  • geographic location: Harbin, Heilongjiang province (45°45' N, 126°41' E)
  • country: China
  • origin.country: CHN
  • continent: Asia
  • latitude: 45.75
  • longitude: 126.683

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Root (Rhizome)
#Host Body-Site#Plant#Sterilized plant part

Sequence information

16S sequences

  • @ref: 19024
  • description: Wangella harbinensis strain NEAU-J3 16S ribosomal RNA gene, partial sequence
  • accession: JQ750973
  • length: 1514
  • database: ena
  • NCBI tax ID: 1176194

GC content

  • @ref: 19024
  • GC-content: 62.5
  • method: thermal denaturation, midpoint method (Tm)

External links

@ref: 19024

culture collection no.: DSM 45747, CGMCC 4.7039

literature

  • topic: Phylogeny
  • Pubmed-ID: 23011010
  • title: Wangella harbinensis gen. nov., sp. nov., a new member of the family Micromonosporaceae.
  • authors: Jia F, Liu C, Wang X, Zhao J, Liu Q, Zhang J, Gao R, Xiang W
  • journal: Antonie Van Leeuwenhoek
  • DOI: 10.1007/s10482-012-9820-1
  • year: 2012
  • mesh: Base Composition, Carbohydrates/analysis, Cell Wall/chemistry, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, Endophytes/*classification/genetics/*isolation & purification, Fatty Acids/analysis, Micromonosporaceae/*classification/genetics/*isolation & purification, Molecular Sequence Data, Phospholipids/analysis, Phylogeny, Plant Roots/microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soybeans/*microbiology, Vitamin K 2/analysis
  • topic2: Enzymology

Reference

@idauthorscataloguedoi/urltitle
19024Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45747)https://www.dsmz.de/collection/catalogue/details/culture/DSM-45747
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ