Strain identifier
BacDive ID: 2338
Type strain: 
Species: Caulobacter mirabilis
Strain history: <- CCUG <- W.-R. Abraham, HZI, Braunschweig, Germany <- J. Smit, Univ. British Columbia, Vancouver, Canada
NCBI tax ID(s): 69666 (species)
version 8.1 (current version)
General
@ref: 15958
BacDive-ID: 2338
DSM-Number: 21795
keywords: 16S sequence, Bacteria, aerobe, mesophilic
description: Caulobacter mirabilis DSM 21795 is an aerobe, mesophilic bacterium that was isolated from activated sludge system of a secondary treatment facility.
NCBI tax id
- NCBI tax id: 69666
- Matching level: species
strain history
- @ref: 15958
- history: <- CCUG <- W.-R. Abraham, HZI, Braunschweig, Germany <- J. Smit, Univ. British Columbia, Vancouver, Canada
doi: 10.13145/bacdive2338.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Caulobacterales
- family: Caulobacteraceae
- genus: Caulobacter
- species: Caulobacter mirabilis
- full scientific name: Caulobacter mirabilis Abraham et al. 2008
@ref: 15958
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Caulobacteraceae
genus: Caulobacter
species: Caulobacter mirabilis
full scientific name: Caulobacter mirabilis Abraham et al. 2008
type strain: yes
Morphology
colony morphology
- @ref: 60442
- incubation period: 2 days
Culture and growth conditions
culture medium
- @ref: 15958
- name: PYEM MEDIUM (DSMZ Medium 1157)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1157
- composition: Name: PYEM MEDIUM (DSMZ Medium 1157) Composition: Yeast extract 2.0 g/l Peptone 2.0 g/l Glucose 1.0 g/l NH4Cl 0.5 g/l MgSO4 0.2 g/l CaCl2 0.1 g/l Riboflavin Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 15958 | positive | growth | 28 | mesophilic |
| 60442 | positive | growth | 30 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 60442
- oxygen tolerance: aerobe
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent | sampling date |
|---|---|---|---|---|---|---|
| 15958 | activated sludge system of a secondary treatment facility | Las Vegas, Nevada | USA | USA | North America | |
| 60442 | Activated sludge | Nevada,Las Vegas | USA | USA | North America | 1986 |
isolation source categories
- Cat1: #Engineered
- Cat2: #Waste
- Cat3: #Activated sludge
taxonmaps
- @ref: 69479
- File name: preview.99_58839.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_73;96_731;97_15693;98_32926;99_58839&stattab=map
- Last taxonomy: Caulobacter mirabilis
- 16S sequence: AJ227774
- Sequence Identity:
- Total samples: 152
- soil counts: 65
- aquatic counts: 39
- animal counts: 42
- plant counts: 6
Safety information
risk assessment
- @ref: 15958
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 15958
- description: Caulobacter mirabilis partial 16S rRNA gene, type strain FWC 38T
- accession: AJ227774
- length: 1435
- database: ena
- NCBI tax ID: 69666
GC content
- @ref: 15958
- GC-content: 68.0
External links
@ref: 15958
culture collection no.: DSM 21795, CCUG 55073, LMG 24261, FWC 38
straininfo link
- @ref: 71895
- straininfo: 309279
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 18676485 | Phylogeny by a polyphasic approach of the order Caulobacterales, proposal of Caulobacter mirabilis sp. nov., Phenylobacterium haematophilum sp. nov. and Phenylobacterium conjunctum sp. nov., and emendation of the genus Phenylobacterium. | Abraham WR, Macedo AJ, Lunsdorf H, Fischer R, Pawelczyk S, Smit J, Vancanneyt M | Int J Syst Evol Microbiol | 10.1099/ijs.0.65567-0 | 2008 | Bacterial Typing Techniques, Blood/*microbiology, Caulobacter/*classification/genetics/isolation & purification/physiology, Caulobacteraceae/*classification/genetics/isolation & purification/physiology, DNA, Bacterial, Fatty Acids/analysis, Fresh Water/*microbiology, Genotype, Humans, Phenotype, *Phylogeny, RNA, Ribosomal, 16S, Sequence Analysis, DNA, Species Specificity | Enzymology |
| Phylogeny | 20134228 | Caulobacter ginsengisoli sp. nov., a novel stalked bacterium isolated from ginseng cultivating soil. | Liu QM, Ten LN, Im WT, Lee ST, Yoon MH | J Microbiol Biotechnol | JMB020-01-02 | 2010 | Base Composition, Caulobacter/*classification/genetics/*isolation & purification/metabolism, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/metabolism, Molecular Sequence Data, Panax/*microbiology, RNA, Ribosomal, 16S/genetics, *Soil Microbiology | Metabolism |
| Phylogeny | 23243096 | Caulobacter daechungensis sp. nov., a stalked bacterium isolated from a eutrophic reservoir. | Jin L, Lee HG, Kim HS, Ahn CY, Oh HM | Int J Syst Evol Microbiol | 10.1099/ijs.0.048884-0 | 2012 | Bacterial Typing Techniques, Base Composition, Caulobacter/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Ubiquinone/analogs & derivatives/analysis, *Water Microbiology | Genetics |
| Phylogeny | 24198059 | Caulobacter profunda sp. nov., isolated from deep freshwater sediment. | Jin L, La HJ, Lee HG, Lee JJ, Lee S, Ahn CY, Oh HM | Int J Syst Evol Microbiol | 10.1099/ijs.0.057240-0 | 2013 | Bacterial Typing Techniques, Caulobacter/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fresh Water/*microbiology, Geologic Sediments/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Ubiquinone/chemistry | Genetics |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 15958 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21795) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-21795 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 60442 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 55073) | https://www.ccug.se/strain?id=55073 | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 71895 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID309279.1 | StrainInfo: A central database for resolving microbial strain identifiers |