Strain identifier
BacDive ID: 2335
Type strain: 
Species: Caulobacter vibrioides
Strain Designation: CB2A
Strain history: <- S. F. Koval, UWO; CB2A <- J. Smit, Univ. of Washington, Seattle, USA (Caulobacter crescentus)
NCBI tax ID(s): 155892 (species)
General
@ref: 17910
BacDive-ID: 2335
DSM-Number: 25117
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Caulobacter vibrioides CB2A is a mesophilic bacterium that was isolated from tap water, spontaneous S-layer negative variant of C. vibrioides CB 2 .
NCBI tax id
- NCBI tax id: 155892
- Matching level: species
strain history
- @ref: 17910
- history: <- S. F. Koval, UWO; CB2A <- J. Smit, Univ. of Washington, Seattle, USA (Caulobacter crescentus)
doi: 10.13145/bacdive2335.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Caulobacterales
- family: Caulobacteraceae
- genus: Caulobacter
- species: Caulobacter vibrioides
- full scientific name: Caulobacter vibrioides Henrici and Johnson 1935 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Caulobacter crescentus
@ref: 17910
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Caulobacteraceae
genus: Caulobacter
species: Caulobacter vibrioides
full scientific name: Caulobacter vibrioides Henrici and Johnson 1935
strain designation: CB2A
type strain: no
Culture and growth conditions
culture medium
- @ref: 17910
- name: CAULOBACTER PYE MEDIUM (DSMZ Medium 1462)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1462
- composition: Name: CAULOBACTER PYE MEDIUM (DSMZ Medium 1462) Composition: Agar 12.0 g/l (optional) Peptone 2.0 g/l Yeast extract 1.0 g/l CaCl2 x 2 H2O 0.07 g/l Distilled water
culture temp
- @ref: 17910
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 17910
- sample type: tap water, spontaneous S-layer negative variant of C. vibrioides CB 2 (DSM 4727)
- host species: Caulobacter vibrioides
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | |
| #Host | #Microbial | #Bacteria |
Safety information
risk assessment
- @ref: 17910
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 17910
- description: Caulobacter crescentus 16S ribosomal RNA gene, complete sequence
- accession: M83799
- length: 1426
- database: ena
- NCBI tax ID: 155892
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Caulobacter vibrioides CB2A | GCA_003856435 | complete | ncbi | 155892 |
| 66792 | Caulobacter vibrioides CB2A | 2840726624 | complete | img | 155892 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 85.048 | no |
| flagellated | no | 70.13 | no |
| gram-positive | no | 98.374 | no |
| anaerobic | no | 99.259 | no |
| aerobic | yes | 92.589 | no |
| halophile | no | 95.145 | no |
| spore-forming | no | 95.878 | no |
| thermophile | no | 97.868 | yes |
| glucose-util | yes | 87.581 | no |
| glucose-ferment | no | 92.695 | no |
External links
@ref: 17910
culture collection no.: DSM 25117
straininfo link
- @ref: 71892
- straininfo: 408095
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 17910 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25117) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-25117 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 71892 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID408095.1 | StrainInfo: A central database for resolving microbial strain identifiers |