Strain identifier
BacDive ID: 23346
Type strain: 
Species: Tahibacter aquaticus
Strain Designation: PYM5-11
Strain history: <- E. M. Tóth, Eötvös Loránd Univ. Budapest, Hungary; PYM5-11 <- J. Makk
NCBI tax ID(s): 520092 (species)
version 8.1 (current version)
General
@ref: 19214
BacDive-ID: 23346
DSM-Number: 21667
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative
description: Tahibacter aquaticus PYM5-11 is a mesophilic, Gram-negative bacterium that was isolated from drinking water supply system.
NCBI tax id
- NCBI tax id: 520092
- Matching level: species
strain history
- @ref: 19214
- history: <- E. M. Tóth, Eötvös Loránd Univ. Budapest, Hungary; PYM5-11 <- J. Makk
doi: 10.13145/bacdive23346.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Lysobacterales
- family: Rhodanobacteraceae
- genus: Tahibacter
- species: Tahibacter aquaticus
- full scientific name: Tahibacter aquaticus Makk et al. 2014
@ref: 19214
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Oceanospirillales
family: Rhodanobacteraceae
genus: Tahibacter
species: Tahibacter aquaticus
full scientific name: Tahibacter aquaticus Makk et al. 2014
strain designation: PYM5-11
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.967
Culture and growth conditions
culture medium
- @ref: 19214
- name: R2A MEDIUM (DSMZ Medium 830)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830
- composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
culture temp
- @ref: 19214
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 97 |
| 69480 | no | 99.8 |
Isolation, sampling and environmental information
isolation
- @ref: 19214
- sample type: drinking water supply system
- geographic location: Budapest
- country: Hungary
- origin.country: HUN
- continent: Europe
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #Freshwater
taxonmaps
- @ref: 69479
- File name: preview.99_123884.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17;96_10543;97_12744;98_17626;99_123884&stattab=map
- Last taxonomy: Tahibacter aquaticus
- 16S sequence: AM981201
- Sequence Identity:
- Total samples: 4146
- soil counts: 2247
- aquatic counts: 1161
- animal counts: 529
- plant counts: 209
Safety information
risk assessment
- @ref: 19214
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 19214
- description: Tahibacter aquaticus partial 16S rRNA gene, type strain PYM5-11T
- accession: AM981201
- length: 1463
- database: ena
- NCBI tax ID: 520092
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Tahibacter aquaticus DSM 21667 | GCA_004363655 | scaffold | ncbi | 520092 |
| 66792 | Tahibacter aquaticus strain DSM 21667 | 520092.4 | wgs | patric | 520092 |
| 66792 | Tahibacter aquaticus DSM 21667 | 2770939572 | draft | img | 520092 |
GC content
- @ref: 19214
- GC-content: 65.4
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 97 | no |
| motile | no | 82.398 | no |
| flagellated | no | 95.709 | no |
| gram-positive | no | 97.559 | no |
| anaerobic | no | 98.849 | no |
| aerobic | yes | 87.114 | no |
| halophile | no | 97.545 | no |
| spore-forming | no | 91.415 | no |
| glucose-util | yes | 91.896 | no |
| thermophile | no | 99.569 | yes |
| glucose-ferment | no | 87.881 | no |
External links
@ref: 19214
culture collection no.: DSM 21667, NCAIM B 02337
straininfo link
- @ref: 87562
- straininfo: 398892
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 21194866 | Tahibacter aquaticus gen. nov., sp. nov., a new gammaproteobacterium isolated from the drinking water supply system of Budapest (Hungary). | Makk J, Homonnay ZG, Keki Z, Lejtovicz Z, Marialigeti K, Sproer C, Schumann P, Toth EM | Syst Appl Microbiol | 10.1016/j.syapm.2010.11.001 | 2010 | Base Composition, Cell Wall/metabolism, DNA, Bacterial/*chemistry, Fresh Water/*microbiology, Gammaproteobacteria/classification/*isolation & purification/physiology, Humans, Hungary, Molecular Sequence Data, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, *Water Supply | Pathogenicity |
| Phylogeny | 25410941 | Tahibacter caeni sp. nov., isolated from activated sludge. | Wu YD, Deng SK, Shi C, Zhu JC, He J, Li SP | Int J Syst Evol Microbiol | 10.1099/ijs.0.068718-0 | 2014 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sewage/*microbiology, Ubiquinone/chemistry, Xanthomonadaceae/*classification/genetics/isolation & purification | Genetics |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 19214 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21667) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-21667 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 87562 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID398892.1 | StrainInfo: A central database for resolving microbial strain identifiers |