Strain identifier
BacDive ID: 23335
Type strain: 
Species: Actinoallomurus vinaceus
Strain Designation: K10-0528
Strain history: A. Matsumoto K10-0528.
NCBI tax ID(s): 1080074 (species)
version 9 (current version)
General
@ref: 19172
BacDive-ID: 23335
DSM-Number: 45858
keywords: 16S sequence, Bacteria
description: Actinoallomurus vinaceus K10-0528 is a bacterium that was isolated from plant root.
NCBI tax id
- NCBI tax id: 1080074
- Matching level: species
strain history
| @ref | history |
|---|---|
| 19172 | <- NBRC; NBRC 108763 <- Y. Takahashi, Kitasato Univ.; K10-0528 |
| 67770 | A. Matsumoto K10-0528. |
doi: 10.13145/bacdive23335.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Streptosporangiales
- family: Thermomonosporaceae
- genus: Actinoallomurus
- species: Actinoallomurus vinaceus
- full scientific name: Actinoallomurus vinaceus Koyama et al. 2012
@ref: 19172
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Thermomonosporaceae
genus: Actinoallomurus
species: Actinoallomurus vinaceus
full scientific name: Actinoallomurus vinaceus Koyama et al. 2012
strain designation: K10-0528
type strain: yes
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 19172 | ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf | |
| 19172 | GPHF-MEDIUM (DSMZ Medium 553) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium553.pdf | |
| 19172 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 19172 | positive | growth | 28 |
| 67770 | positive | growth | 28 |
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: MK-9(H6), MK-9(H8)
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent | host species |
|---|---|---|---|---|---|---|
| 19172 | plant root | Kanagawa | Japan | JPN | Asia | |
| 67770 | Root of a perennial plant, Ophiopogon japonicus | Kanagawa Pref. | Japan | JPN | Asia | Ophiopogon japonicus |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | |
| #Host Body-Site | #Plant | #Root (Rhizome) |
taxonmaps
- @ref: 69479
- File name: preview.99_177604.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_239;96_5383;97_6498;98_8091;99_177604&stattab=map
- Last taxonomy: Actinoallomurus vinaceus
- 16S sequence: AB668307
- Sequence Identity:
- Total samples: 16
- soil counts: 12
- animal counts: 2
- plant counts: 2
Safety information
risk assessment
- @ref: 19172
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20218
- description: Actinoallomurus vinaceus gene for 16S ribosomal RNA, partial sequence
- accession: AB668307
- length: 1303
- database: nuccore
- NCBI tax ID: 1080074
GC content
- @ref: 67770
- GC-content: 72
- method: high performance liquid chromatography (HPLC)
External links
@ref: 19172
culture collection no.: DSM 45858, BCC 49425, JCM 17939, NBRC 108763
straininfo link
- @ref: 87552
- straininfo: 407037
literature
- topic: Phylogeny
- Pubmed-ID: 22511226
- title: Isolation of actinomycetes from the root of the plant, Ophiopogon japonicus, and proposal of two new species, Actinoallomurus liliacearum sp. nov. and Actinoallomurus vinaceus sp. nov.
- authors: Koyama R, Matsumoto A, Inahashi Y, Omura S, Takahashi Y
- journal: J Antibiot (Tokyo)
- DOI: 10.1038/ja.2012.31
- year: 2012
- mesh: Actinomycetales/genetics/*isolation & purification, Bacterial Typing Techniques, DNA, Bacterial/chemistry, Japan, Molecular Sequence Data, Nucleic Acid Hybridization, Ophiopogon/*chemistry, Phylogeny, Plant Roots, RNA, Bacterial/chemistry, RNA, Ribosomal, 16S/genetics, Sequence Analysis, RNA
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 19172 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45858) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-45858 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 87552 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID407037.1 | StrainInfo: A central database for resolving microbial strain identifiers |