Archive BacDiveID:10.13145/bacdive23333.20240510.9

Strain identifier

BacDive ID: 23333

Type strain:

Species: Actinomadura apis

Strain Designation: IM17-1

Strain history: P. Chantawannakul IM17-1.

NCBI tax ID(s): 755139 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 19120

BacDive-ID: 23333

DSM-Number: 45861

keywords: 16S sequence, Bacteria

description: Actinomadura apis IM17-1 is a bacterium that was isolated from honey bee hive.

NCBI tax id

NCBI tax id: 755139
Matching level: species

strain history

@ref	history
19120	<- JCM; JCM 16576 <- P. Chantawannakul; IM17-1
67770	P. Chantawannakul IM17-1.

doi: 10.13145/bacdive23333.20240510.9

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/actinomycetota
domain: Bacteria
phylum: Actinomycetota
class: Actinomycetes
order: Streptosporangiales
family: Thermomonosporaceae
genus: Actinomadura
species: Actinomadura apis
full scientific name: Actinomadura apis Promnuan et al. 2011

@ref: 19120

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Thermomonosporaceae

genus: Actinomadura

species: Actinomadura apis

full scientific name: Actinomadura apis Promnuan et al. 2011

strain designation: IM17-1

type strain: yes

Morphology

multimedia

@ref: 19120
multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_45861.jpg
caption: Medium 553 28°C
intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@ref	name	growth	link	composition
19120	GPHF-MEDIUM (DSMZ Medium 553)	yes	https://mediadive.dsmz.de/medium/553	Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water
19120	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	yes	https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium65.pdf
19120	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)	yes	https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium535.pdf

culture temp

@ref	growth	type	temperature
19120	positive	growth	28
67770	positive	growth	28

Physiology and metabolism

observation

@ref: 67770
observation: quinones: MK-9(H₆), MK-9(H₈), MK-9(H₄)

Isolation, sampling and environmental information

isolation

@ref	sample type	geographic location	country	origin.country	continent	host species
19120	honey bee (Apis mellifera) hive	Chiang Mai Province	Thailand	THA	Asia
67770	Honey bee (Apis mellifera) hive	Chiang Mai Province	Thailand	THA	Asia	Apis mellifera

isolation source categories

Cat1: #Host
Cat2: #Arthropoda
Cat3: #Insecta

Safety information

risk assessment

@ref: 19120
biosafety level: 1
biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@ref: 19120
description: Actinomadura apis gene for 16S rRNA, partial sequence
accession: AB557596
length: 1495
database: nuccore
NCBI tax ID: 755139

GC content

@ref: 19120
GC-content: 73.7
method: high performance liquid chromatography (HPLC)

External links

@ref: 19120

culture collection no.: DSM 45861, JCM 16576, TISTR 1980

straininfo link

@ref: 87550
straininfo: 404691

literature

topic	Pubmed-ID	title	authors	journal	DOI	year	mesh	topic2
Phylogeny	20952541	Actinomadura apis sp. nov., isolated from a honey bee (Apis mellifera) hive, and the reclassification of Actinomadura cremea subsp. rifamycini Gauze et al. 1987 as Actinomadura rifamycini (Gauze et al. 1987) sp. nov., comb. nov.	Promnuan Y, Kudo T, Ohkuma M, Chantawannakul P	Int J Syst Evol Microbiol	10.1099/ijs.0.026633-0	2010	Actinomycetales/classification/genetics/isolation & purification/physiology, Aerobiosis, Animals, Bacterial Typing Techniques, Bees/microbiology, Carbohydrates/analysis, Cell Wall/chemistry, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Thailand, Urticaria/microbiology	Genetics
Phylogeny	21705447	Actinomadura sediminis sp. nov., a marine actinomycete isolated from mangrove sediment.	He J, Xu Y, Sahu MK, Tian XP, Nie GX, Xie Q, Zhang S, Sivakumar K, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.032979-0	2011	Actinomycetales/classification/genetics/isolation & purification/physiology, Aerobiosis, Bacterial Typing Techniques, Carbohydrates/analysis, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, *Environmental Microbiology, Fatty Acids/analysis, India, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/analysis, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spores, Bacterial/cytology	Genetics
Phylogeny	30091696	Actinomadura deserti sp. nov., isolated from desert soil.	Cao C, Xu T, Liu J, Cai X, Sun Y, Qin S, Jiang J, Huang Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.002922	2018	Actinomycetales/classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Desert Climate, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry	Transcriptome

Reference

@id	authors	catalogue	doi/url	title
19120	Curators of the DSMZ	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45861)	https://www.dsmz.de/collection/catalogue/details/culture/DSM-45861
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.		10.1099/ijsem.0.004332	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
67770	Curators of the JCM		https://jcm.brc.riken.jp/en/
87550	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.		10.60712/SI-ID404691.1	StrainInfo: A central database for resolving microbial strain identifiers