Strain identifier

BacDive ID: 2333

Type strain: No

Species: Caulobacter vibrioides

Strain Designation: CB-G

Strain history: CIP <- 1970, F. Gasser, Inst. Pasteur, Paris, France <- NCIB <- E.A. Grula <- J. Poindaxter: strain CB-G

NCBI tax ID(s): 155892 (species)

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General

@ref: 1744

BacDive-ID: 2333

DSM-Number: 4738

keywords: 16S sequence, Bacteria

description: Caulobacter vibrioides CB-G is a bacterium of the family Caulobacteraceae.

NCBI tax id

  • NCBI tax id: 155892
  • Matching level: species

strain history

@refhistory
1744<- ATCC <- R.H. Weaver
123833CIP <- 1970, F. Gasser, Inst. Pasteur, Paris, France <- NCIB <- E.A. Grula <- J. Poindaxter: strain CB-G

doi: 10.13145/bacdive2333.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Caulobacterales
  • family: Caulobacteraceae
  • genus: Caulobacter
  • species: Caulobacter vibrioides
  • full scientific name: Caulobacter vibrioides Henrici and Johnson 1935 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Caulobacter crescentus

@ref: 1744

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Caulobacteraceae

genus: Caulobacter

species: Caulobacter vibrioides

full scientific name: Caulobacter vibrioides Henrici and Johnson 1935

strain designation: CB-G

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
1744CAULOBACTER MEDIUM (DSMZ Medium 595)yeshttps://mediadive.dsmz.de/medium/595Name: CAULOBACTER MEDIUM (DSMZ Medium 595) Composition: Agar 15.0 g/l Bacto peptone 2.0 g/l Yeast extract 1.0 g/l MgSO4 x 7 H2O 0.2 g/l Tap water
41073MEDIUM 28 - for CaulobacteryesDistilled water make up to (1000.000 ml);Magnesium sulphate heptahydrate (0.200 g);Agar (10.000 g);Yeast extract (1.000 g);Peptone (2.000 g)
123833CIP Medium 28yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=28

culture temp

@refgrowthtypetemperature
1744positivegrowth30
41073positivegrowth30

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample typeisolation date
41073KentuckyUSAUSANorth America
123833KentuckyUnited States of AmericaUSANorth AmericaEnvironment, Well water1953

taxonmaps

  • @ref: 69479
  • File name: preview.99_1259.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_73;96_731;97_854;98_995;99_1259&stattab=map
  • Last taxonomy: Caulobacter
  • 16S sequence: AJ227755
  • Sequence Identity:
  • Total samples: 6141
  • soil counts: 1503
  • aquatic counts: 2002
  • animal counts: 1667
  • plant counts: 969

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
17441Risk group (German classification)
1238332Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Caulobacter vibrioides DNA for 16S ribosomal RNA, strain ATCC 11764AJ2277551439nuccore155892
124043Caulobacter vibrioides gene for 16S rRNA, partial sequence.AB0085311246nuccore155892

External links

@ref: 1744

culture collection no.: DSM 4738, ATCC 11764, CIP 70.55, NCIMB 9082

straininfo link

  • @ref: 71890
  • straininfo: 35423

literature

  • topic: Phylogeny
  • Pubmed-ID: 26354335
  • title: Caulobacter flavus sp. nov., a stalked bacterium isolated from rhizosphere soil.
  • authors: Sun LN, Yang ED, Wei JC, Tang XY, Cao YY, Han GM
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.000585
  • year: 2015
  • mesh: Bacterial Typing Techniques, Base Composition, Caulobacter/*classification/genetics/isolation & purification, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Ubiquinone/chemistry
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
1744Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 4738)https://www.dsmz.de/collection/catalogue/details/culture/DSM-4738
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
41073Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/10528
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
71890Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID35423.1StrainInfo: A central database for resolving microbial strain identifiers
123833Curators of the CIPCollection of Institut Pasteur (CIP 70.55)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2070.55
124043Dr. Isabel Schober, Dr. Julia KoblitzData extracted from sequence databases, automatically matched based on designation and taxonomy