Strain identifier
BacDive ID: 23311
Type strain: 
Species: Streptomyces daliensis
Strain history: KCTC 19076 <-- P. Xu et al. YIM 31724.
NCBI tax ID(s): 299421 (species)
version 8.1 (current version)
General
@ref: 19184
BacDive-ID: 23311
DSM-Number: 42095
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, Gram-positive
description: Streptomyces daliensis DSM 42095 is a spore-forming, mesophilic, Gram-positive bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 299421
- Matching level: species
strain history
| @ref | history |
|---|---|
| 19184 | <- KCTC; KCTC 19076 |
| 67770 | KCTC 19076 <-- P. Xu et al. YIM 31724. |
doi: 10.13145/bacdive23311.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces daliensis
- full scientific name: Streptomyces daliensis Xu et al. 2012
@ref: 19184
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces daliensis
full scientific name: Streptomyces daliensis Xu et al. 2012
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 100
Culture and growth conditions
culture medium
- @ref: 19184
- name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
- growth: yes
- link: https://mediadive.dsmz.de/medium/65
- composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 19184 | positive | growth | 28 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | yes | 100 |
| 69480 | yes | 100 |
observation
- @ref: 67770
- observation: quinones: MK-9(H8), MK-9(H6)
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 19184 | soil | Yunnan Province, Dali | China | CHN | Asia |
| 67770 | Soil | Dali, Yunnan Province | China | CHN | Asia |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
Safety information
risk assessment
- @ref: 19184
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20218
- description: Streptomyces daliensis 16S ribosomal RNA gene, partial sequence
- accession: AY785161
- length: 1520
- database: ena
- NCBI tax ID: 299421
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Streptomyces daliensis DSM 42095 | GCA_018138425 | scaffold | ncbi | 299421 |
| 66792 | Streptomyces daliensis strain DSM 42095 | 299421.4 | wgs | patric | 299421 |
GC content
- @ref: 67770
- GC-content: 67.2
- method: thermal denaturation, midpoint method (Tm)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 100 | no |
| motile | no | 91.501 | no |
| flagellated | no | 97.207 | no |
| gram-positive | yes | 89.546 | no |
| anaerobic | no | 99.245 | no |
| aerobic | yes | 94.087 | no |
| halophile | no | 89.235 | no |
| spore-forming | yes | 95.129 | no |
| glucose-util | yes | 90.774 | no |
| glucose-ferment | no | 86.229 | no |
| thermophile | no | 98.716 | yes |
External links
@ref: 19184
culture collection no.: DSM 42095, CCTCC AA 204020, KCTC 19076, YIM 31724, JCM 19963
straininfo link
- @ref: 87529
- straininfo: 133436
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 16341608 | Streptomyces daliensis sp. nov. from soil. | Xu P, Li WJ, Tang SK, Gao HY, Xu LH, Jiang CL | Antonie Van Leeuwenhoek | 10.1007/s10482-005-9010-5 | 2005 | Base Composition, China, DNA, Bacterial/chemistry/genetics, Genotype, Microscopy, Electron, Scanning, Phenotype, Phylogeny, *Soil Microbiology, Species Specificity, Streptomyces/classification/genetics/*isolation & purification/metabolism | Genetics |
| Phylogeny | 34421874 | Streptomyces tardus sp. nov.: A Slow-Growing Actinobacterium Producing Candicidin, Isolated From Sediments of the Trondheim Fjord. | Kralova S, Sandoval-Powers M, Fawwal DV, Degnes KF, Lewin AS, Klinkenberg G, Nguyen GS, Liles MR, Wentzel A | Front Microbiol | 10.3389/fmicb.2021.714233 | 2021 |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 19184 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 42095) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-42095 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 87529 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID133436.1 | StrainInfo: A central database for resolving microbial strain identifiers |