Strain identifier
BacDive ID: 23263
Type strain: 
Species: Sphingobacterium multivorum
Strain Designation: Kodana S-1, KS 0506
Strain history: <- IFO <- IAM
NCBI tax ID(s): 28454 (species)
version 9.1 (current version)
General
@ref: 18917
BacDive-ID: 23263
DSM-Number: 11703
keywords: genome sequence, Bacteria, Gram-negative
description: Sphingobacterium multivorum Kodana S-1 is a Gram-negative bacterium of the family Sphingobacteriaceae.
NCBI tax id
- NCBI tax id: 28454
- Matching level: species
strain history
- @ref: 18917
- history: <- IFO <- IAM
doi: 10.13145/bacdive23263.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Sphingobacteriia
- order: Sphingobacteriales
- family: Sphingobacteriaceae
- genus: Sphingobacterium
- species: Sphingobacterium multivorum
- full scientific name: Sphingobacterium multivorum (Holmes et al. 1981) Yabuuchi et al. 1983
synonyms
- @ref: 20215
- synonym: Flavobacterium multivorum
@ref: 18917
domain: Bacteria
phylum: Bacteroidetes
class: Sphingobacteriia
order: Sphingobacteriales
family: Sphingobacteriaceae
genus: Sphingobacterium
species: Sphingobacterium multivorum
full scientific name: Sphingobacterium multivorum (Holmes et al. 1981) Yabuuchi et al. 1983 emend. Hahnke et al. 2016
strain designation: Kodana S-1, KS 0506
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 98.104
Culture and growth conditions
culture medium
- @ref: 18917
- name: NUTRIENT AGAR (DSMZ Medium 1)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1
- composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
culture temp
- @ref: 18917
- growth: positive
- type: growth
- temperature: 28
Physiology and metabolism
spore formation
- @ref: 69481
- spore formation: no
- confidence: 100
Safety information
risk assessment
- @ref: 18917
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
- @ref: 66792
- description: Sphingobacterium multivorum strain FDAARGOS_1142
- accession: 28454.15
- assembly level: complete
- database: patric
- NCBI tax ID: 28454
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69481 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 100 | no |
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 98.104 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 96.227 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 87.978 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 85.725 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 98 | no |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 87.5 | no |
External links
@ref: 18917
culture collection no.: DSM 11703
straininfo link
- @ref: 87486
- straininfo: 407331
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 18917 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 11703) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-11703 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
| 87486 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID407331.1 | StrainInfo: A central database for resolving microbial strain identifiers |