Strain identifier
BacDive ID: 23261
Type strain: 
Species: Sphingobacterium multivorum
Strain Designation: KS 0433
Strain history: H. Oyaizu KS 0433 <-- AJ 2449 <-- IAM 1014.
NCBI tax ID(s): 28454 (species)
version 9.1 (current version)
General
@ref: 18915
BacDive-ID: 23261
DSM-Number: 11688
keywords: genome sequence, 16S sequence, Bacteria, Gram-negative
description: Sphingobacterium multivorum KS 0433 is a Gram-negative bacterium of the family Sphingobacteriaceae.
NCBI tax id
- NCBI tax id: 28454
- Matching level: species
strain history
| @ref | history |
|---|---|
| 18915 | <- IFO <- JCM <- H. Oyaizu |
| 67770 | H. Oyaizu KS 0433 <-- AJ 2449 <-- IAM 1014. |
doi: 10.13145/bacdive23261.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Sphingobacteriia
- order: Sphingobacteriales
- family: Sphingobacteriaceae
- genus: Sphingobacterium
- species: Sphingobacterium multivorum
- full scientific name: Sphingobacterium multivorum (Holmes et al. 1981) Yabuuchi et al. 1983
synonyms
- @ref: 20215
- synonym: Flavobacterium multivorum
@ref: 18915
domain: Bacteria
phylum: Bacteroidetes
class: Sphingobacteriia
order: Sphingobacteriales
family: Sphingobacteriaceae
genus: Sphingobacterium
species: Sphingobacterium multivorum
full scientific name: Sphingobacterium multivorum (Holmes et al. 1981) Yabuuchi et al. 1983 emend. Hahnke et al. 2016
strain designation: KS 0433
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 98.604
Culture and growth conditions
culture medium
- @ref: 18915
- name: NUTRIENT AGAR (DSMZ Medium 1)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1
- composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 18915 | positive | growth | 28 |
| 67770 | positive | growth | 30 |
Physiology and metabolism
spore formation
- @ref: 69481
- spore formation: no
- confidence: 97
observation
- @ref: 67770
- observation: quinones: MK-7
Safety information
risk assessment
- @ref: 18915
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Sphingobacterium multivorum gene for 16S rRNA, partial sequence, strain: NBRC 14986 | AB680734 | 1454 | nuccore | 28454 |
| 67770 | Sphingobacterium multivorum gene for 16S rRNA, partial sequence, strain: JCM 7461 | LC379098 | 1451 | nuccore | 28454 |
Genome sequences
- @ref: 66792
- description: Sphingobacterium multivorum strain FDAARGOS_1140
- accession: 28454.18
- assembly level: complete
- database: patric
- NCBI tax ID: 28454
GC content
- @ref: 67770
- GC-content: 39.4
- method: thermal denaturation, midpoint method (Tm)
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69481 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 97 | no |
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 98.604 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 95.972 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 88.187 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 98.5 | yes |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 86.803 | no |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 87.042 | no |
External links
@ref: 18915
culture collection no.: DSM 11688, IAM 1014, IFO 14986, JCM 7461, NBRC 14986
straininfo link
- @ref: 87484
- straininfo: 62831
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 18915 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 11688) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-11688 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 87484 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID62831.1 | StrainInfo: A central database for resolving microbial strain identifiers |