Strain identifier
BacDive ID: 23201
Type strain: 
Species: Microlunatus cavernae
Strain history: S.-K. Tang YIM C01117.
NCBI tax ID(s): 1332898 (species)
version 9 (current version)
General
@ref: 19324
BacDive-ID: 23201
DSM-Number: 26248
keywords: 16S sequence, Bacteria
description: Microlunatus cavernae DSM 26248 is a bacterium that was isolated from cave soil.
NCBI tax id
- NCBI tax id: 1332898
- Matching level: species
strain history
| @ref | history |
|---|---|
| 19324 | <- S.-K. Tang, YIM; YIM C01117 <- J. Cheng |
| 67770 | S.-K. Tang YIM C01117. |
doi: 10.13145/bacdive23201.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Propionibacteriales
- family: Propionibacteriaceae
- genus: Microlunatus
- species: Microlunatus cavernae
- full scientific name: Microlunatus cavernae Cheng et al. 2013
@ref: 19324
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Propionibacteriaceae
genus: Microlunatus
species: Microlunatus cavernae
full scientific name: Microlunatus cavernae Cheng et al. 2013
type strain: yes
Morphology
colony morphology
- @ref: 19324
- incubation period: 8-14 days
Culture and growth conditions
culture medium
- @ref: 19324
- name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
- growth: yes
- link: https://mediadive.dsmz.de/medium/65
- composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 19324 | positive | growth | 28 |
| 67770 | positive | growth | 28 |
Physiology and metabolism
murein
- @ref: 19324
- murein short key: A42.01
- type: A3gamma' LL-Dpm-Gly
observation
- @ref: 67770
- observation: quinones: MK-9(H4)
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 19324 | cave soil | Yunnan | China | CHN | Asia |
| 67770 | Soil at Alu Ancient Cave | Yunnan Province, south-west China | China | CHN | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Geologic |
| #Environmental | #Terrestrial | #Soil |
taxonmaps
- @ref: 69479
- File name: preview.99_173714.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_72;96_19542;97_83896;98_113749;99_173714&stattab=map
- Last taxonomy: Microlunatus cavernae subclade
- 16S sequence: KC693588
- Sequence Identity:
- Total samples: 291
- soil counts: 103
- aquatic counts: 4
- animal counts: 177
- plant counts: 7
Sequence information
16S sequences
- @ref: 19324
- description: Microlunatus sp. YIM C01117 16S ribosomal RNA gene, partial sequence
- accession: KC693588
- length: 1480
- database: nuccore
- NCBI tax ID: 1332898
GC content
| @ref | GC-content | method |
|---|---|---|
| 19324 | 65.9 | |
| 67770 | 65.9 | high performance liquid chromatography (HPLC) |
External links
@ref: 19324
culture collection no.: DSM 26248, JCM 18536, YIM C01117
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 23653120 | Microlunatus cavernae sp. nov., a novel actinobacterium isolated from Alu ancient cave, Yunnan, South-West China. | Cheng J, Chen W, Huo-Zhang B, Nimaichand S, Zhou EM, Lu XH, Klenk HP, Li WJ | Antonie Van Leeuwenhoek | 10.1007/s10482-013-9929-x | 2013 | Base Composition, Base Sequence, Caves/*microbiology, China, DNA, Bacterial/genetics, Fatty Acids/analysis, Hydrogen-Ion Concentration, Lipids/analysis, Molecular Sequence Data, Phenotype, Phylogeny, Propionibacteriaceae/classification/drug effects/genetics/growth & development/*isolation & purification/metabolism, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Alignment, Sequence Homology, Nucleic Acid, Species Specificity, Temperature, Vitamin K 2/analysis | Genetics |
| Phylogeny | 31485839 | Microlunatus speluncae sp. nov., a novel actinobacterium isolated from a Karstic subterranean environment sample. | Xie YG, Fang BZ, Han MX, Liu L, Jiao JY, Zhang XT, Xiao M, Li WJ | Antonie Van Leeuwenhoek | 10.1007/s10482-019-01321-4 | 2019 | Actinomycetales/classification/genetics, Base Composition/genetics, Glycolipids/metabolism, Phosphatidylglycerols/metabolism, Phosphatidylinositols/metabolism, Phylogeny, Propionibacteriaceae/classification/*genetics, RNA, Ribosomal, 16S/genetics | Metabolism |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 19324 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26248) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-26248 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta |