Strain identifier
BacDive ID: 23196
Type strain: 
Species: Bhargavaea indica
Strain Designation: KJW98
Strain history: <- Y S Shouche, Pune Univ., India
NCBI tax ID(s): 627618 (species)
version 8.1 (current version)
General
@ref: 19354
BacDive-ID: 23196
DSM-Number: 22308
keywords: 16S sequence, Bacteria, aerobe, rod-shaped
description: Bhargavaea indica KJW98 is an aerobe, rod-shaped bacterium that was isolated from Marine subsurface sediment at a depth of 10.4 M.
NCBI tax id
- NCBI tax id: 627618
- Matching level: species
strain history
| @ref | history |
|---|---|
| 19354 | <- Y. S. Shouche, NCCS Complex, Univ. of Pune Campus, India; KJW98 <- P. Verma |
| 67771 | <- Y S Shouche, Pune Univ., India |
doi: 10.13145/bacdive23196.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Caryophanaceae
- genus: Bhargavaea
- species: Bhargavaea indica
- full scientific name: Bhargavaea indica Verma et al. 2013
@ref: 19354
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Planococcaceae
genus: Bhargavaea
species: Bhargavaea indica
full scientific name: Bhargavaea indica Verma et al.
strain designation: KJW98
type strain: yes
Morphology
cell morphology
| @ref | cell shape | motility | gram stain |
|---|---|---|---|
| 67771 | rod-shaped | no | |
| 67771 | positive |
Culture and growth conditions
culture temp
- @ref: 67771
- growth: positive
- type: growth
- temperature: 37-42
Physiology and metabolism
oxygen tolerance
- @ref: 67771
- oxygen tolerance: aerobe
spore formation
- @ref: 67771
- spore formation: no
observation
- @ref: 67771
- observation: quinones: MK-8
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 19354 | Marine subsurface sediment at a depth of 10.4 M | Karnataka, Karwar district, Jetty, Arabian Sea | India | IND | Asia |
| 67771 | From marine subsurface sediment (10.M water depth, Arabian sea) | Karwar Jetty, Karwar district, Karnataka | India | IND | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Marine |
| #Environmental | #Aquatic | #Sediment |
taxonmaps
- @ref: 69479
- File name: preview.99_5557.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_2682;97_3294;98_4145;99_5557&stattab=map
- Last taxonomy: Bhargavaea
- 16S sequence: FJ716700
- Sequence Identity:
- Total samples: 1707
- soil counts: 871
- aquatic counts: 273
- animal counts: 344
- plant counts: 219
Sequence information
16S sequences
- @ref: 19354
- description: Bhargavaea indica strain KJW98 16S ribosomal RNA gene, partial sequence
- accession: FJ716700
- length: 1528
- database: ena
- NCBI tax ID: 627618
GC content
- @ref: 67771
- GC-content: 55.0
External links
@ref: 19354
culture collection no.: DSM 22308, KCTC 13583, LMG 25219
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 23456710 | Bhargavaea indica sp. nov., a member of the phylum Firmicutes, isolated from Arabian Sea sediment. | Verma P, Seong CN, Pandey PK, Bhonde RR, Sproer C, Rohde M, Shouche YS | J Microbiol | 10.1007/s12275-013-2488-z | 2013 | Aerobiosis, Bacillales/*classification/genetics/*isolation & purification/physiology, Bacterial Typing Techniques, Base Composition, Cluster Analysis, DNA Gyrase/genetics, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Geologic Sediments/*microbiology, Hemolysin Proteins/metabolism, Hemolysis, Hydrogen-Ion Concentration, India, Lysine/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, Spores, Bacterial/growth & development, Temperature | Metabolism |
| Phylogeny | 30151776 | Bhargavaea changchunensis sp. nov. isolated from soil in China. | Tian FH, Fan DY, Zhang C, Jia CW, Gao W, Li Y, Li CT | Arch Microbiol | 10.1007/s00203-018-1563-6 | 2018 | Base Composition, China, DNA, Bacterial/chemistry, Fatty Acids/analysis, Nucleic Acid Hybridization, Phylogeny, Planococcaceae/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, *Soil Microbiology | Enzymology |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 19354 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22308) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-22308 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta |