Archive BacDiveID:10.13145/bacdive23184.20240510.9

Strain identifier

BacDive ID: 23184

Type strain:

Species: Desulfotomaculum sp.

Strain Designation: WW1

Strain history: <- M. Balk, Wageningen University, Laboratory of Microbiology, Netherlands; WW1 <- J. Weijma {1998}

NCBI tax ID(s): 41211 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 18810

BacDive-ID: 23184

DSM-Number: 15631

keywords: 16S sequence, Bacteria, anaerobe

description: Desulfotomaculum sp. WW1 is an anaerobe bacterium that was isolated from thermophilic anaerobic bioreactor.

NCBI tax id

NCBI tax id: 41211
Matching level: species

strain history

@ref: 18810
history: <- M. Balk, Wageningen University, Laboratory of Microbiology, Netherlands; WW1 <- J. Weijma {1998}

doi: 10.13145/bacdive23184.20240510.9

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/bacillota
domain: Bacteria
phylum: Bacillota
class: Clostridia
order: Eubacteriales
family: Peptococcaceae
genus: Desulfotomaculum
species: Desulfotomaculum sp.
full scientific name: Desulfotomaculum Campbell and Postgate 1965 (Approved Lists 1980)

@ref: 18810

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Peptococcaceae

genus: Desulfotomaculum

species: Desulfotomaculum sp.

full scientific name: Desulfotomaculum sp.

strain designation: WW1

type strain: no

Morphology

colony morphology

@ref: 18810
incubation period: 2-3 days

Culture and growth conditions

culture medium

@ref: 18810
name: DESULFOVIBRIO (POSTGATE) MEDIUM (DSMZ Medium 63)
growth: yes
link: https://mediadive.dsmz.de/medium/63
composition: Name: DESULFOVIBRIO (POSTGATE) MEDIUM (DSMZ Medium 63) Composition: MgSO4 x 7 H2O 2.0 g/l Na-DL-lactate 2.0 g/l NH4Cl 1.0 g/l Yeast extract 1.0 g/l Na2SO4 1.0 g/l FeSO4 x 7 H2O 0.5 g/l K2HPO4 0.5 g/l CaCl2 x 2 H2O 0.1 g/l Na-thioglycolate 0.1 g/l Ascorbic acid 0.1 g/l Sodium resazurin 0.0005 g/l Distilled water

culture temp

@ref: 18810
growth: positive
type: growth
temperature: 65

Physiology and metabolism

oxygen tolerance

@ref: 18810
oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

@ref: 18810
sample type: thermophilic anaerobic bioreactor
geographic location: Wageningen
country: Netherlands
origin.country: NLD
continent: Europe

isolation source categories

Cat1	Cat2
#Engineered	#Bioreactor
#Condition	#Anoxic (anaerobic)
#Condition	#Thermophilic (>45°C)

taxonmaps

@ref: 69479
File name: preview.99_16106.png
url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_403;96_4734;97_9871;98_12140;99_16106&stattab=map
Last taxonomy: Desulfofundulus thermocisternus
16S sequence: AF442687
Sequence Identity:
Total samples: 212
soil counts: 8
aquatic counts: 26
animal counts: 168
plant counts: 10

Sequence information

16S sequences

@ref: 18810
description: Desulfotomaculum sp. WW1 16S ribosomal RNA gene, partial sequence
accession: AF442687
length: 1403
database: nuccore
NCBI tax ID: 178878

External links

@ref: 18810

culture collection no.: DSM 15631

straininfo link

@ref: 87416
straininfo: 405487

Reference

@id	authors	catalogue	doi/url	title
18810	Curators of the DSMZ	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15631)	https://www.dsmz.de/collection/catalogue/details/culture/DSM-15631
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.		10.1099/ijsem.0.004332	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.		https://microbeatlas.org/	MicrobeAtlas 1.0 beta
87416	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.		10.60712/SI-ID405487.1	StrainInfo: A central database for resolving microbial strain identifiers