Archive BacDiveID:10.13145/bacdive23174.20230509.8.1

Strain identifier

BacDive ID: 23174

Type strain:

Species: Cohnella arctica

Strain history: <- USDA/ARS, Peoria, USA; B-59459

NCBI tax ID(s): 889520 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 19138

BacDive-ID: 23174

DSM-Number: 26756

keywords: 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-negative, motile, rod-shaped

description: Cohnella arctica DSM 26756 is an aerobe, spore-forming, mesophilic bacterium that was isolated from soil, Arctic tundra.

NCBI tax id

NCBI tax id: 889520
Matching level: species

strain history

@ref: 19138
history: <- USDA/ARS, Peoria, USA; B-59459

doi: 10.13145/bacdive23174.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/bacillota
domain: Bacteria
phylum: Bacillota
class: Bacilli
order: Caryophanales
family: Paenibacillaceae
genus: Cohnella
species: Cohnella arctica
full scientific name: Cohnella arctica Jiang et al. 2012

@ref: 19138

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Paenibacillaceae

genus: Cohnella

species: Cohnella arctica

full scientific name: Cohnella arctica Jiang et al. 2012

type strain: yes

Morphology

cell morphology

@ref: 30173
gram stain: negative
cell length: 1.3-2.3 µm
cell width: 0.2-0.3 µm
cell shape: rod-shaped
motility: yes

colony morphology

@ref: 19138
incubation period: >14 days

pigmentation

@ref: 30173
production: yes

Culture and growth conditions

culture medium

@ref: 19138
name: MODIFIED BACTO MARINE BROTH (DSMZ Medium 514d)
growth: yes
link: https://mediadive.dsmz.de/medium/514d
composition: Name: MODIFIED BACTO MARINE BROTH (DSMZ Medium 514d) Composition: Difco marine broth 37.4 g/l Agar 15.0 g/l Malt extract 1.0 g/l Soy peptone 1.0 g/l Pancreatic digest of casein 1.0 g/l Distilled water

culture temp

@ref	growth	type	temperature	range
19138	positive	growth	25	mesophilic
30173	positive	growth	4-30
30173	positive	optimum	25	mesophilic

culture pH

@ref	ability	type	pH
30173	positive	growth	05-08
30173	positive	optimum	06-07

Physiology and metabolism

oxygen tolerance

@ref: 30173
oxygen tolerance: aerobe

spore formation

@ref: 30173
spore formation: yes

halophily

@ref: 30173
salt: NaCl
growth: positive
tested relation: growth
concentration: 0.50 %

metabolite utilization

@ref	Chebi-ID	metabolite	utilization activity	kind of utilization tested
30173	17306	maltose	+	carbon source
30173	37684	mannose	+	carbon source
30173	4853	esculin	+	hydrolysis

enzymes

@ref	value	activity	ec
30173	acid phosphatase	+	3.1.3.2
30173	alkaline phosphatase	+	3.1.3.1
30173	alpha-galactosidase	+	3.2.1.22
30173	catalase	+	1.11.1.6
30173	cytochrome oxidase	+	1.9.3.1

Isolation, sampling and environmental information

isolation

@ref: 19138
sample type: soil, Arctic tundra
geographic location: Svalbard Islands, Ny-Alesund settlement
country: Norway
origin.country: NOR
continent: Europe

isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil
#Environmental	#Terrestrial	#Tundra
#Climate	#Cold	#Tundra

taxonmaps

@ref: 69479
File name: preview.99_147046.png
url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15358;96_10968;97_54573;98_72196;99_147046&stattab=map
Last taxonomy: Cohnella arctica subclade
16S sequence: HQ315787
Sequence Identity:
Total samples: 33
soil counts: 15
aquatic counts: 3
animal counts: 1
plant counts: 14

Safety information

risk assessment

@ref: 19138
biosafety level: 1
biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@ref: 19138
description: Cohnella arctica strain M9-62 16S ribosomal RNA gene, partial sequence
accession: HQ315787
length: 1441
database: ena
NCBI tax ID: 889520

GC content

@ref: 19138
GC-content: 50.3

External links

@ref: 19138

culture collection no.: DSM 26756, CCTCC AB 2010228, NRRL B-59459

straininfo link

@ref: 87407
straininfo: 405858

literature

topic: Phylogeny
Pubmed-ID: 21571931
title: Cohnella arctica sp. nov., isolated from Arctic tundra soil.
authors: Jiang F, Dai J, Wang Y, Xue X, Xu M, Li W, Fang C, Peng F
journal: Int J Syst Evol Microbiol
DOI: 10.1099/ijs.0.030247-0
year: 2011
mesh: Arctic Regions, Bacillales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Norway, Phosphatidylglycerols/genetics, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Svalbard, Vitamin K 2/analogs & derivatives/chemistry
topic2: Genetics

Reference

@id	authors	catalogue	doi/url	title	ID_cross_reference	pubmed
19138	Curators of the DSMZ	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26756)	https://www.dsmz.de/collection/catalogue/details/culture/DSM-26756
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.		10.1099/ijsem.0.004332	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
30173	Barberan A, Caceres Velazquez H, Jones S, Fierer N.		10.1128/mSphere.00237-17	Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information	26522	28776041
69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.		https://microbeatlas.org/	MicrobeAtlas 1.0 beta
87407	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.		10.60712/SI-ID405858.1	StrainInfo: A central database for resolving microbial strain identifiers