Strain identifier
BacDive ID: 23142
Type strain: 
Species: Mycoplasma struthionis
Strain Designation: 237IA
Strain history: <- J. Spergser, Dept. Pathobiology, Univ. Veterinary Medicine Vienna, Austria; 237IA
NCBI tax ID(s): 538220 (species)
version 8.1 (current version)
General
@ref: 19079
BacDive-ID: 23142
DSM-Number: 22453
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative
description: Mycoplasma struthionis 237IA is a mesophilic, Gram-negative bacterium that was isolated from lung of an ostrich .
NCBI tax id
- NCBI tax id: 538220
- Matching level: species
strain history
- @ref: 19079
- history: <- J. Spergser, Dept. Pathobiology, Univ. Veterinary Medicine Vienna, Austria; 237IA
doi: 10.13145/bacdive23142.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/mycoplasmatota
- domain: Bacteria
- phylum: Mycoplasmatota
- class: Mollicutes
- order: Mycoplasmatales
- family: Mycoplasmataceae
- genus: Mycoplasma
- species: Mycoplasma struthionis
- full scientific name: Mycoplasma struthionis Spergser et al. 2021
@ref: 19079
domain: Bacteria
phylum: Tenericutes
class: Mollicutes
order: Mycoplasmatales
family: Mycoplasmataceae
genus: Mycoplasma
species: Mycoplasma struthionis
full scientific name: Mycoplasma struthionis Spergser et al. 2020
strain designation: 237IA
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.867
colony morphology
- @ref: 19079
- incubation period: 2-3 days
Culture and growth conditions
culture medium
- @ref: 19079
- name: SP4-Z MEDIUM (DSMZ Medium 1076b)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1076b
- composition: Name: SP4-Z MEDIUM (DSMZ Medium 1076b) Composition: Agar 10.0 g/l Tryptone 10.0 g/l Bacto peptone 5.0 g/l PPLO broth 3.5 g/l Urea 2.0 g/l Glucose 1.0 g/l None 1.0 g/l Yeast extract 0.4 g/l DNA 0.2 g/l CMRL 1066 Fetal bovine serum Swine serum Distilled water
culture temp
- @ref: 19079
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.999 |
Isolation, sampling and environmental information
isolation
- @ref: 19079
- sample type: lung of an ostrich (Struthio camelus)
- host species: Struthio camelus
- country: Namibia
- origin.country: NAM
- continent: Africa
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Birds | |
| #Host Body-Site | #Oral cavity and airways | #Lung |
taxonmaps
- @ref: 69479
- File name: preview.99_112310.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15862;96_2203;97_19547;98_76135;99_112310&stattab=map
- Last taxonomy: Mycoplasma struthionis subclade
- 16S sequence: FM165077
- Sequence Identity:
- Total samples: 102
- soil counts: 1
- animal counts: 99
- plant counts: 2
Sequence information
16S sequences
- @ref: 19079
- description: Mycoplasma sp. 237IAT partial 16S rRNA gene, strain type strain 237IAT
- accession: FM165077
- length: 1450
- database: ena
- NCBI tax ID: 538220
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Mycoplasma struthionis 237IA | GCA_003855455 | complete | ncbi | 538220 |
| 66792 | Mycoplasma sp. 237IA | 538220.3 | complete | patric | 538220 |
| 66792 | Mycoplasma struthionis 237IA | 2847355428 | complete | img | 538220 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| flagellated | no | 97.054 | no |
| gram-positive | no | 59.254 | no |
| anaerobic | no | 94.371 | no |
| aerobic | no | 93.824 | no |
| halophile | no | 53.636 | no |
| spore-forming | no | 98.29 | no |
| thermophile | no | 96.271 | yes |
| glucose-util | yes | 85.681 | no |
| motile | no | 93.995 | no |
| glucose-ferment | yes | 72.17 | no |
External links
@ref: 19079
culture collection no.: DSM 22453
straininfo link
- @ref: 87376
- straininfo: 407302
literature
- topic: Phylogeny
- Pubmed-ID: 31859015
- title: Mycoplasma nasistruthionis sp. nov. and Mycoplasma struthionis sp. nov. isolated from ostriches with respiratory disease.
- authors: Spergser J, Botes A, Nel T, Ruppitsch W, Lepuschitz S, Langer S, Ries S, Dinhopl N, Szostak M, Loncaric I, Busse HJ
- journal: Syst Appl Microbiol
- DOI: 10.1016/j.syapm.2019.126047
- year: 2019
- mesh: Animals, Bird Diseases/*microbiology, DNA, Bacterial/genetics, DNA, Ribosomal Spacer/genetics, Genes, Bacterial/genetics, Genome, Bacterial/genetics, Mycoplasma/chemistry/*classification/cytology/physiology, Mycoplasma Infections/microbiology/*veterinary, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Respiratory Tract Infections/microbiology/*veterinary, Sequence Analysis, DNA, Species Specificity, Struthioniformes/*microbiology
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 19079 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22453) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-22453 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
| 87376 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID407302.1 | StrainInfo: A central database for resolving microbial strain identifiers |