Strain identifier

BacDive ID: 23133

Type strain: Yes

Species: Mycobacterium franklinii

Strain Designation: CV002, CV02

Strain history: <- K. Simmon, ARUP laboratories, USA; CV02

NCBI tax ID(s): 948102 (species)

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General

@ref: 18869

BacDive-ID: 23133

DSM-Number: 45524

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Mycobacterium franklinii CV002 is a mesophilic bacterium that was isolated from skin lesion.

NCBI tax id

  • NCBI tax id: 948102
  • Matching level: species

strain history

  • @ref: 18869
  • history: <- K. Simmon, ARUP laboratories, USA; CV02

doi: 10.13145/bacdive23133.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Mycobacteriaceae
  • genus: Mycobacterium
  • species: Mycobacterium franklinii
  • full scientific name: Mycobacterium franklinii Nogueira et al. 2015

  • synonyms

    • @ref: 20215
    • synonym: Mycobacteroides franklinii

@ref: 18869

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Mycobacteriaceae

genus: Mycobacterium

species: Mycobacterium franklinii

full scientific name: Mycobacterium franklinii Nogueira et al. 2015 emend. Nouioui et al. 2018

strain designation: CV002, CV02

type strain: yes

Morphology

multimedia

  • @ref: 18869
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_45524.jpg
  • caption: Medium 645 35°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

  • @ref: 18869
  • name: MIDDLEBROOK MEDIUM (DSMZ Medium 645)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/645
  • composition: Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water

culture temp

  • @ref: 18869
  • growth: positive
  • type: growth
  • temperature: 35
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 18869
  • sample type: skin lesion
  • geographic location: New York
  • country: USA
  • origin.country: USA
  • continent: North America

isolation source categories

Cat1Cat2Cat3
#Host Body-Site#Other#Wound
#Host Body-Site#Organ#Skin, Nail, Hair

taxonmaps

  • @ref: 69479
  • File name: preview.99_54.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_44;97_46;98_50;99_54&stattab=map
  • Last taxonomy: Mycobacteroides
  • 16S sequence: HQ153090
  • Sequence Identity:
  • Total samples: 21994
  • soil counts: 7046
  • aquatic counts: 6199
  • animal counts: 7007
  • plant counts: 1742

Sequence information

16S sequences

  • @ref: 18869
  • description: Mycobacterium franklinii strain CV002 16S ribosomal RNA gene, partial sequence
  • accession: HQ153090
  • length: 1406
  • database: ena
  • NCBI tax ID: 948102

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Mycobacteroides franklinii DSM 45524GCA_004355025scaffoldncbi948102
66792Mycobacteroides franklinii DSM 45524GCA_002086225contigncbi948102
66792Mycobacterium franklinii strain CV002948102.6wgspatric948102
66792Mycobacterium franklinii strain DSM 45524948102.7wgspatric948102
66792Mycobacteroides franklinii strain DSM 45524948102.12wgspatric948102
66792Mycobacteroides franklinii DSM 455242865538287draftimg948102
66792Mycobacteroides franklinii DSM 455242867455628draftimg948102

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno96.183no
flagellatedno98.719no
gram-positiveyes90.228no
anaerobicno99.5no
aerobicyes91.463no
halophileno94.097no
spore-formingno84.403no
glucose-utilyes82.858no
thermophileno99.25yes
glucose-fermentno92.688no

External links

@ref: 18869

culture collection no.: DSM 45524, ATCC BAA 2149

straininfo link

  • @ref: 87368
  • straininfo: 402174

literature

  • topic: Phylogeny
  • Pubmed-ID: 25858242
  • title: Mycobacterium franklinii sp. nov., a species closely related to members of the Mycobacterium chelonae-Mycobacterium abscessus group.
  • authors: Lourenco Nogueira C, Simmon KE, Chimara E, Cnockaert M, Carlos Palomino J, Martin A, Vandamme P, Brown-Elliott BA, Wallace RJ, Cardoso Leao S
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.000234
  • year: 2015
  • mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, DNA, Ribosomal Spacer/genetics, Genes, Bacterial, Molecular Sequence Data, Mycobacterium/*classification/genetics, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitle
18869Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45524)https://www.dsmz.de/collection/catalogue/details/culture/DSM-45524
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
87368Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID402174.1StrainInfo: A central database for resolving microbial strain identifiers