Strain identifier
BacDive ID: 23131
Type strain: 
Species: Psychrobacter okhotskensis
Strain Designation: MD17
Strain history: I. Yumoto MD17.
NCBI tax ID(s): 212403 (species)
version 7.1 (current version)
General
@ref: 18906
BacDive-ID: 23131
DSM-Number: 18357
keywords: 16S sequence, Bacteria, psychrophilic
description: Psychrobacter okhotskensis MD17 is a psychrophilic bacterium that was isolated from Seawater from the Monbetsu coast of the Okhotsk Sea in Hokkaido.
NCBI tax id
- NCBI tax id: 212403
- Matching level: species
strain history
doi: 10.13145/bacdive23131.20221219.7.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Moraxellaceae
- genus: Psychrobacter
- species: Psychrobacter okhotskensis
- full scientific name: Psychrobacter okhotskensis Yumoto et al. 2003
@ref: 18906
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Moraxellaceae
genus: Psychrobacter
species: Psychrobacter okhotskensis
full scientific name: Psychrobacter okhotskensis Yumoto et al. 2003
strain designation: MD17
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.792
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 18906 | BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) | yes | https://mediadive.dsmz.de/medium/514 | Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water |
| 33918 | Marine agar (MA) | yes | Distilled water make up to (1000.000 ml);Marine agar (55.100 g) |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 18906 | positive | growth | 20 | psychrophilic |
| 33918 | positive | growth | 20 | psychrophilic |
| 67770 | positive | growth | 20 | psychrophilic |
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: no
- confidence: 98.747
halophily
- @ref: 69480
- halophily level: non-halophilic
- confidence: 96.633
observation
- @ref: 67770
- observation: quinones: Q-8
Isolation, sampling and environmental information
isolation
| @ref | sample type | country | origin.country | continent |
|---|---|---|---|---|
| 18906 | Seawater from the Monbetsu coast of the Okhotsk Sea in Hokkaido | Japan | JPN | Asia |
| 67770 | Seawater from the Monbetsu coast of the Okhotsk Sea in Hokkaido | Japan | JPN | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Marine |
| #Environmental | #Terrestrial | #Coast |
taxonmaps
- @ref: 69479
- File name: preview.99_279.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_80;96_193;97_209;98_234;99_279&stattab=map
- Last taxonomy: Psychrobacter
- 16S sequence: AB094794
- Sequence Identity:
- Total samples: 7634
- soil counts: 925
- aquatic counts: 3187
- animal counts: 3350
- plant counts: 172
Safety information
risk assessment
- @ref: 18906
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 18906
- description: Psychrobacter okhotskensis gene for 16S ribosomal RNA, partial sequence
- accession: AB094794
- length: 1492
- database: ena
- NCBI tax ID: 212403
GC content
- @ref: 67770
- GC-content: 46.7
- method: high performance liquid chromatography (HPLC)
External links
@ref: 18906
culture collection no.: DSM 18357, JCM 11840, CIP 108221, NCIMB 13931
straininfo link
- @ref: 20218
- passport: http://www.straininfo.net/strains/371392
literature
- topic: Phylogeny
- Pubmed-ID: 14657134
- title: Psychrobacter okhotskensis sp. nov., a lipase-producing facultative psychrophile isolated from the coast of the Okhotsk Sea.
- authors: Yumoto I, Hirota K, Sogabe Y, Nodasaka Y, Yokota Y, Hoshino T
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.02686-0
- year: 2003
- mesh: Base Composition, Base Sequence, DNA, Bacterial/chemistry, Japan, Molecular Sequence Data, Moraxellaceae/*classification/enzymology/genetics/isolation & purification, *Phylogeny, Seawater/microbiology, Temperature
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 18906 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18357) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-18357 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 33918 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/5820 | ||||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) |