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Strain identifier

BacDive ID: 23131

Type strain: Yes

Species: Psychrobacter okhotskensis

Strain Designation: MD17

Strain history: I. Yumoto MD17.

NCBI tax ID(s): 212403 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 18906

BacDive-ID: 23131

DSM-Number: 18357

keywords: 16S sequence, Bacteria, psychrophilic

description: Psychrobacter okhotskensis MD17 is a psychrophilic bacterium that was isolated from Seawater from the Monbetsu coast of the Okhotsk Sea in Hokkaido.

NCBI tax id

  • NCBI tax id: 212403
  • Matching level: species

strain history

doi: 10.13145/bacdive23131.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Moraxellaceae
  • genus: Psychrobacter
  • species: Psychrobacter okhotskensis
  • full scientific name: Psychrobacter okhotskensis Yumoto et al. 2003

@ref: 18906

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Moraxellaceae

genus: Psychrobacter

species: Psychrobacter okhotskensis

full scientific name: Psychrobacter okhotskensis Yumoto et al. 2003

strain designation: MD17

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 99.792

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
18906BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
33918Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)

culture temp

@refgrowthtypetemperaturerange
18906positivegrowth20psychrophilic
33918positivegrowth20psychrophilic
67770positivegrowth20psychrophilic

Physiology and metabolism

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 98.747

halophily

  • @ref: 69480
  • halophily level: non-halophilic
  • confidence: 96.633

observation

  • @ref: 67770
  • observation: quinones: Q-8

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
18906Seawater from the Monbetsu coast of the Okhotsk Sea in HokkaidoJapanJPNAsia
67770Seawater from the Monbetsu coast of the Okhotsk Sea in HokkaidoJapanJPNAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Terrestrial#Coast

taxonmaps

  • @ref: 69479
  • File name: preview.99_279.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_80;96_193;97_209;98_234;99_279&stattab=map
  • Last taxonomy: Psychrobacter
  • 16S sequence: AB094794
  • Sequence Identity:
  • Total samples: 7634
  • soil counts: 925
  • aquatic counts: 3187
  • animal counts: 3350
  • plant counts: 172

Safety information

risk assessment

  • @ref: 18906
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 18906
  • description: Psychrobacter okhotskensis gene for 16S ribosomal RNA, partial sequence
  • accession: AB094794
  • length: 1492
  • database: ena
  • NCBI tax ID: 212403

GC content

  • @ref: 67770
  • GC-content: 46.7
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 18906

culture collection no.: DSM 18357, JCM 11840, CIP 108221, NCIMB 13931

straininfo link

  • @ref: 20218
  • passport: http://www.straininfo.net/strains/371392

literature

  • topic: Phylogeny
  • Pubmed-ID: 14657134
  • title: Psychrobacter okhotskensis sp. nov., a lipase-producing facultative psychrophile isolated from the coast of the Okhotsk Sea.
  • authors: Yumoto I, Hirota K, Sogabe Y, Nodasaka Y, Yokota Y, Hoshino T
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.02686-0
  • year: 2003
  • mesh: Base Composition, Base Sequence, DNA, Bacterial/chemistry, Japan, Molecular Sequence Data, Moraxellaceae/*classification/enzymology/genetics/isolation & purification, *Phylogeny, Seawater/microbiology, Temperature
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
18906Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18357)https://www.dsmz.de/collection/catalogue/details/culture/DSM-18357
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
33918Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/5820
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)