Strain identifier

BacDive ID: 231

Type strain: Yes

Species: Globicatella sanguinis

Strain Designation: 1152-78

Strain history: CIP <- 2001, CCUG <- 1994, B. Phillips, NCFB, Reading, UK <- R.R. Facklam: strain 1152-78

NCBI tax ID(s): 13076 (species)

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General

@ref: 3154

BacDive-ID: 231

DSM-Number: 7447

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive, ovoid-shaped, human pathogen

description: Globicatella sanguinis 1152-78 is an aerobe, mesophilic, Gram-positive human pathogen that was isolated from blood culture, bacteraemia.

NCBI tax id

  • NCBI tax id: 13076
  • Matching level: species

strain history

@refhistory
3154<- NCFB <- R.R. Facklam, 1152-78
122424CIP <- 2001, CCUG <- 1994, B. Phillips, NCFB, Reading, UK <- R.R. Facklam: strain 1152-78

doi: 10.13145/bacdive231.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Aerococcaceae
  • genus: Globicatella
  • species: Globicatella sanguinis
  • full scientific name: Globicatella sanguinis corrig. Collins et al. 1995

  • synonyms

    • @ref: 20215
    • synonym: Globicatella sanguis

@ref: 3154

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Aerococcaceae

genus: Globicatella

species: Globicatella sanguinis

full scientific name: Globicatella sanguinis Collins et al. 1995

strain designation: 1152-78

type strain: yes

Morphology

cell morphology

  • @ref: 122424
  • gram stain: positive
  • cell shape: ovoid-shaped
  • motility: no

colony morphology

  • @ref: 122424
  • hemolysis ability: 1

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
3154TODD-HEWITT MEDIUM (DSMZ Medium 697)yeshttps://mediadive.dsmz.de/medium/697Name: TODD-HEWITT MEDIUM (DSMZ Medium 697) Composition: Casein peptone 20.0 g/l Meat infusion 10.0 g/l NaCl 2.0 g/l NaHCO3 2.0 g/l Dextrose 2.0 g/l Na2HPO4 0.4 g/l Distilled water
39643MEDIUM 6 - Columbia agar with 10 % horse bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
122424CIP Medium 6yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6

culture temp

@refgrowthtypetemperaturerange
3154positivegrowth37mesophilic
39643positivegrowth37
51308positivegrowth37
122424positivegrowth25-45
122424nogrowth10psychrophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
51308aerobe
51308microaerophile
122424facultative anaerobe

halophily

  • @ref: 122424
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 6.5 %

murein

  • @ref: 3154
  • murein short key: A11
  • type: A1alpha L-Lys-direct

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate+builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate+builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose+builds acid from32528
68371gentiobiose+builds acid from28066
68371xylitol-builds acid from17151
68371glycogen+builds acid from28087
68371starch+builds acid from28017
68371raffinose+builds acid from16634
68371melezitose-builds acid from6731
68371inulin+builds acid from15443
68371trehalose+builds acid from27082
68371sucrose+builds acid from17992
68371melibiose+builds acid from28053
68371lactose+builds acid from17716
68371maltose+builds acid from17306
68371cellobiose+builds acid from17057
68371salicin+builds acid from17814
68371esculin+builds acid from4853
68371arbutin+builds acid from18305
68371amygdalin+builds acid from27613
68371N-acetylglucosamine+builds acid from59640
68371methyl alpha-D-mannoside-builds acid from43943
68371D-mannitol+builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside+builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose+builds acid from65327
68371D-ribose+builds acid from16988
68371L-arabinose+builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
122424esculin+hydrolysis4853
122424hippurate+hydrolysis606565
122424nitrate-reduction17632
122424nitrite-reduction16301

antibiotic resistance

  • @ref: 122424
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite tests

  • @ref: 122424
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: -

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase-3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase-3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase-3.1.3.1
122424oxidase-
122424beta-galactosidase+3.2.1.23
122424alcohol dehydrogenase-1.1.1.1
122424catalase-1.11.1.6
122424gamma-glutamyltransferase+2.3.2.2
122424lysine decarboxylase-4.1.1.18
122424ornithine decarboxylase-4.1.1.17

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
122424--++-------+---+----

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
122424+/---+++--+++++----++/--+/-++++++++++++-+++-++------+-+

Isolation, sampling and environmental information

isolation

@refsample typesampling datecountryorigin.countrycontinentisolation date
3154blood culture, bacteraemia
51308Human blood,bacteremia1978
122424Human, BloodUnited KingdomGBREurope1994

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body Product#Fluids#Blood
#Host#Microbial#Bacteria
#Infection#Disease
#Infection#Patient

Safety information

risk assessment

@refpathogenicity humanpathogenicity animalbiosafety levelbiosafety level comment
3154yesyes2Risk group (German classification)
1224241Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Alloiococcus otitis strain CCUG 32997 16S-23S ribosomal RNA intergenic spacer, complete sequenceJQ012769227ena1652
20218Globicatella sanguinis gene for 16S rRNA, partial sequence, strain: NBRC 15551AB6809011475ena13076
2021816S rRNA [Globicatella sanguis, rRNA, 1451 nt]S502141451ena13076

GC content

  • @ref: 3154
  • GC-content: 37.0
  • method: thermal denaturation, midpoint method (Tm)

External links

@ref: 3154

culture collection no.: DSM 7447, ATCC 51173, NCFB 2835, CCUG 32999, CIP 107044, CCM 4548

straininfo link

  • @ref: 69914
  • straininfo: 14081

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
3154Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 7447)https://www.dsmz.de/collection/catalogue/details/culture/DSM-7447
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
39643Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/19241
51308Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 32999)https://www.ccug.se/strain?id=32999
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69914Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID14081.1StrainInfo: A central database for resolving microbial strain identifiers
122424Curators of the CIPCollection of Institut Pasteur (CIP 107044)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107044