Strain identifier
BacDive ID: 23072
Type strain: 
Species: Stomatobaculum longum
Strain Designation: HM-480
Strain history: <- M. V. Sizova, Northeastern Univ., Boston, USA; ACC2 <- M. V. Sizova {2010}
NCBI tax ID(s): 796942 (species)
version 8.1 (current version)
General
@ref: 19279
BacDive-ID: 23072
DSM-Number: 24645
keywords: 16S sequence, Bacteria, anaerobe, mesophilic, Gram-variable, rod-shaped
description: Stomatobaculum longum HM-480 is an anaerobe, mesophilic, Gram-variable bacterium that was isolated from healthy human dental plague.
NCBI tax id
- NCBI tax id: 796942
- Matching level: species
strain history
- @ref: 19279
- history: <- M. V. Sizova, Northeastern Univ., Boston, USA; ACC2 <- M. V. Sizova {2010}
doi: 10.13145/bacdive23072.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Lachnospiraceae
- genus: Stomatobaculum
- species: Stomatobaculum longum
- full scientific name: Stomatobaculum longum Sizova et al. 2013
@ref: 19279
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Lachnospiraceae
genus: Stomatobaculum
species: Stomatobaculum longum
full scientific name: Stomatobaculum longum Sizova et al. 2013
strain designation: HM-480
type strain: yes
Morphology
cell morphology
- @ref: 30713
- gram stain: variable
- cell length: 22 µm
- cell width: 0.65 µm
- cell shape: rod-shaped
- motility: no
pigmentation
- @ref: 30713
- production: yes
Culture and growth conditions
culture medium
- @ref: 19279
- name: PY + X MEDIUM (DSMZ Medium 104b)
- growth: yes
- link: https://mediadive.dsmz.de/medium/104b
- composition: Name: PY + X MEDIUM (DSMZ Medium 104b) Composition: Yeast extract 10.0 g/l D-Glucose 5.0 g/l Trypticase peptone 5.0 g/l Meat peptone 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Sodium resazurin 0.0005 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 19279 | positive | growth | 37 | mesophilic |
| 30713 | positive | growth | 30-42 | |
| 30713 | positive | optimum | 37 | mesophilic |
culture pH
- @ref: 30713
- ability: positive
- type: growth
- pH: 4.9-7.5
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance |
|---|---|
| 19279 | anaerobe |
| 30713 | anaerobe |
spore formation
- @ref: 30713
- spore formation: no
observation
- @ref: 30713
- observation: aggregates in clumps
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 30713 | 17234 | glucose | + | carbon source |
| 30713 | 17306 | maltose | + | carbon source |
| 30713 | 17992 | sucrose | + | carbon source |
Isolation, sampling and environmental information
isolation
- @ref: 19279
- sample type: healthy human dental plague
- geographic location: MA, Boston
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Human | |
| #Host Body-Site | #Oral cavity and airways | #Tooth |
| #Host Body Product | #Oral cavity and Airways | #Dental plaque |
taxonmaps
- @ref: 69479
- File name: preview.99_3277.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_387;96_1709;97_2046;98_2513;99_3277&stattab=map
- Last taxonomy: Stomatobaculum longum subclade
- 16S sequence: HM120209
- Sequence Identity:
- Total samples: 52960
- soil counts: 541
- aquatic counts: 688
- animal counts: 51438
- plant counts: 293
Safety information
risk assessment
- @ref: 19279
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 19279
- description: Stomatobaculum longum strain ACC2 16S ribosomal RNA gene, partial sequence
- accession: HM120209
- length: 1377
- database: ena
- NCBI tax ID: 796942
GC content
| @ref | GC-content | method |
|---|---|---|
| 19279 | 55.3 | high performance liquid chromatography (HPLC) |
| 30713 | 55.175 |
External links
@ref: 19279
culture collection no.: DSM 24645, ACC 2
straininfo link
- @ref: 87310
- straininfo: 405520
literature
- topic: Phylogeny
- Pubmed-ID: 22843721
- title: Stomatobaculum longum gen. nov., sp. nov., an obligately anaerobic bacterium from the human oral cavity.
- authors: Sizova MV, Muller P, Panikov N, Mandalakis M, Hohmann T, Hazen A, Fowle W, Prozorov T, Bazylinski DA, Epstein SS
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.042812-0
- year: 2012
- mesh: Adult, Bacteria, Anaerobic/classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Dental Plaque/*microbiology, Fatty Acids/analysis, Female, Humans, Molecular Sequence Data, Mouth/*microbiology, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
- topic2: Pathogenicity
Reference
| @id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed | journal |
|---|---|---|---|---|---|---|---|
| 19279 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24645) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-24645 | ||||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | ||||
| 30713 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 27044 | 28776041 | ||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 33211880 | Nucleic Acids Res. 49: D498-D508 2020 | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | ||||
| 87310 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID405520.1 | StrainInfo: A central database for resolving microbial strain identifiers |