General

@ref: 19242

BacDive-ID: 23065

DSM-Number: 19821

keywords: 16S sequence, Bacteria, mesophilic

description: Halomonas sediminis YIM-C248 is a mesophilic bacterium that was isolated from salt lake sediment.

NCBI tax id

• NCBI tax id: 470784
• Matching level: species

strain history

• @ref: 19242
• history: <- S.-K. Tang, YIM; YIM-C248

doi: 10.13145/bacdive23065.20230509.8.1

Name and taxonomic classification

LPSN

• @ref: 20215
• description: domain/bacteria
• keyword: phylum/pseudomonadota
• domain: Bacteria
• phylum: Pseudomonadota
• class: Gammaproteobacteria
• order: Oceanospirillales
• family: Halomonadaceae
• genus: Halomonas
• species: Halomonas sediminis
• full scientific name: Halomonas sediminis Huang et al. 2008

@ref: 19242

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Oceanospirillales

family: Halomonadaceae

genus: Halomonas

species: Halomonas sediminis

full scientific name: Halomonas sediminis Huang et al. 2008

strain designation: YIM-C248

type strain: yes

Culture and growth conditions

culture medium

• @ref: 19242
• name: MEDIUM 514 PLUS ADDITIONAL SALT (DSMZ Medium 514b)
• growth: yes
• link: https://mediadive.dsmz.de/medium/514b
• composition: Name: MEDIUM 514 plus additional salt (DSMZ Medium 514b; with strain-specific modifications) Composition: NaCl 80.0 g/l Agar 17.5 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

• @ref: 19242
• growth: positive
• type: growth
• temperature: 37
• range: mesophilic

Isolation, sampling and environmental information

isolation

• @ref: 19242
• sample type: salt lake sediment
• geographic location: Qaidam Basin in Qinghai, Dachaidamu salt-lake (37° 46' N–37° 55' N and 95° 22' E–95° 33' E)
• country: China
• origin.country: CHN
• continent: Asia
• latitude: 37.8333
• longitude: 95.45

isolation source categories

Sequence information

16S sequences

• @ref: 19242
• description: Halomonas sediminis strain YIM C248 16S ribosomal RNA gene, partial sequence
• accession: EU135707
• length: 1479
• database: ena
• NCBI tax ID: 470784

GC content

• @ref: 19242
• GC-content: 58.6
• method: high performance liquid chromatography (HPLC)

External links

@ref: 19242

culture collection no.: DSM 19821, CCTCC AA 207031, KCTC 22167

literature

• topic: Phylogeny
• Pubmed-ID: 18825306
• title: Halomonas sediminis sp. nov., a new halophilic bacterium isolated from salt-lake sediment in China.
• authors: Huang HY, Chen YG, Wang YX, Liu JH, Tang SK, Peng Q, Wen ML, Yu H, Cui XL
• journal: Extremophiles
• DOI: 10.1007/s00792-008-0189-z
• year: 2008
• mesh: China, Genes, Bacterial, Geologic Sediments/*microbiology, Halomonas/classification/genetics/*isolation & purification, Nucleic Acid Hybridization, Phylogeny, *Water Microbiology
• topic2: Enzymology

Reference