Strain identifier
BacDive ID: 23018
Type strain: 
Species: Empedobacter sp.
Strain Designation: F-Fue-04TIIa
Strain history: <- A. Lipski, School of Biology/Chemistry, Univ. Osnabrück, Germany; F-Fue-04TIIa <- P. Herzog
NCBI tax ID(s): 1927715 (species)
General
@ref: 18815
BacDive-ID: 23018
DSM-Number: 18019
keywords: 16S sequence, Bacteria
description: Empedobacter sp. F-Fue-04TIIa is a bacterium that was isolated from Brewery filling plant.
NCBI tax id
- NCBI tax id: 1927715
- Matching level: species
strain history
- @ref: 18815
- history: <- A. Lipski, School of Biology/Chemistry, Univ. Osnabrück, Germany; F-Fue-04TIIa <- P. Herzog
doi: 10.13145/bacdive23018.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Weeksellaceae
- genus: Empedobacter
- species: Empedobacter sp.
- full scientific name: Empedobacter (ex Prévot 1961) Vandamme et al. 1994
synonyms
- @ref: 20215
- synonym: Wautersiella
@ref: 18815
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Weeksellaceae
genus: Empedobacter
species: Empedobacter sp.
full scientific name: Empedobacter sp.
strain designation: F-Fue-04TIIa
type strain: no
Culture and growth conditions
culture medium
- @ref: 18815
- name: TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545)
- growth: yes
- link: https://mediadive.dsmz.de/medium/545
- composition: Name: TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545) Composition: Casein peptone 17.0 g/l NaCl 5.0 g/l Soy peptone 3.0 g/l D(+)-Glucose 2.5 g/l K2HPO4 2.5 g/l Distilled water
culture temp
- @ref: 18815
- growth: positive
- type: growth
- temperature: 28
Isolation, sampling and environmental information
isolation
- @ref: 18815
- sample type: Brewery filling plant
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Industrial | #Engineered product |
| #Engineered | #Industrial | #Plant (Factory) |
taxonmaps
- @ref: 69479
- File name: preview.99_26368.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_468;96_3493;97_4281;98_5481;99_26368&stattab=map
- Last taxonomy: Wautersiella enshiensis
- 16S sequence: AM232808
- Sequence Identity:
- Total samples: 2279
- soil counts: 242
- aquatic counts: 349
- animal counts: 1525
- plant counts: 163
Sequence information
16S sequences
- @ref: 18815
- description: Empedobacter sp. F-Fue-04TIIa partial 16S rRNA gene, isolate F-Fue-04TIIa
- accession: AM232808
- length: 1417
- database: nuccore
- NCBI tax ID: 373670
External links
@ref: 18815
culture collection no.: DSM 18019
straininfo link
- @ref: 87258
- straininfo: 398921
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 18815 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18019) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-18019 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 87258 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID398921.1 | StrainInfo: A central database for resolving microbial strain identifiers |