Strain identifier
BacDive ID: 23015
Type strain: 
Species: Lonsdalea populi
Strain Designation: NY011
Strain history: <- T. Lakatos, Nemaform Ltd., Nagykálló, Hungary; NY011 <- T. Tóth and T. Lakatos, Research and Extension Centre for Fruit Growing, Hungary
NCBI tax ID(s): 1172565 (species)
General
@ref: 19346
BacDive-ID: 23015
DSM-Number: 25468
keywords: 16S sequence, Bacteria, plant pathogen
description: Lonsdalea populi NY011 is a plant pathogen that was isolated from bark canker of poplar.
NCBI tax id
- NCBI tax id: 1172565
- Matching level: species
strain history
- @ref: 19346
- history: <- T. Lakatos, Nemaform Ltd., Nagykálló, Hungary; NY011 <- T. Tóth and T. Lakatos, Research and Extension Centre for Fruit Growing, Hungary
doi: 10.13145/bacdive23015.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Pectobacteriaceae
- genus: Lonsdalea
- species: Lonsdalea populi
- full scientific name: Lonsdalea populi (Tóth et al. 2013) Li et al. 2017
synonyms
- @ref: 20215
- synonym: Lonsdalea quercina subsp. populi
@ref: 19346
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacteriales, not validated
family: Pectobacteriaceae
genus: Lonsdalea
species: Lonsdalea populi
full scientific name: Lonsdalea populi (Tóth et al. 2013) Li et al. 2017
strain designation: NY011
type strain: no
Culture and growth conditions
culture medium
- @ref: 19346
- name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)
- growth: yes
- link: https://mediadive.dsmz.de/medium/535
- composition: Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
culture temp
- @ref: 19346
- growth: positive
- type: growth
- temperature: 28
Isolation, sampling and environmental information
isolation
- @ref: 19346
- sample type: bark canker of poplar
- geographic location: Szentkirály
- country: Hungary
- origin.country: HUN
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Tree |
| #Host Body-Site | #Plant | #Bark |
taxonmaps
- @ref: 69479
- File name: preview.99_5709.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_6;96_1578;97_1884;98_2312;99_5709&stattab=map
- Last taxonomy: Lonsdalea
- 16S sequence: JQ291573
- Sequence Identity:
- Total samples: 1561
- soil counts: 95
- aquatic counts: 154
- animal counts: 1104
- plant counts: 208
Safety information
risk assessment
- @ref: 19346
- pathogenicity plant: yes
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 19346
- description: Lonsdalea quercina subsp. populi strain NY011 16S ribosomal RNA gene, partial sequence
- accession: JQ291573
- length: 1509
- database: nuccore
- NCBI tax ID: 1172565
External links
@ref: 19346
culture collection no.: DSM 25468
straininfo link
- @ref: 87255
- straininfo: 386947
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 19346 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25468) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-25468 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 87255 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID386947.1 | StrainInfo: A central database for resolving microbial strain identifiers |