Strain identifier

BacDive ID: 2300

Type strain: No

Species: Brevundimonas naejangsanensis

Strain history: IAM 12557 <-- NCIB 9407 <-- NRRL B-2395 <-- S. E. Hartsell.

NCBI tax ID(s): 588932 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 9151

BacDive-ID: 2300

DSM-Number: 30130

keywords: 16S sequence, Bacteria, mesophilic

description: Brevundimonas naejangsanensis DSM 30130 is a mesophilic bacterium of the family Caulobacteraceae.

NCBI tax id

  • NCBI tax id: 588932
  • Matching level: species

strain history

@refhistory
9151<- ATCC <- H. J. Conn. Previously assigned to Brevundimonas diminuta
67770IAM 12557 <-- NCIB 9407 <-- NRRL B-2395 <-- S. E. Hartsell.

doi: 10.13145/bacdive2300.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Caulobacterales
  • family: Caulobacteraceae
  • genus: Brevundimonas
  • species: Brevundimonas naejangsanensis
  • full scientific name: Brevundimonas naejangsanensis Kang et al. 2009

@ref: 9151

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Caulobacteraceae

genus: Brevundimonas

species: Brevundimonas naejangsanensis

full scientific name: Brevundimonas naejangsanensis Kang et al. 2009

type strain: no

Culture and growth conditions

culture medium

  • @ref: 9151
  • name: NUTRIENT AGAR (DSMZ Medium 1)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1
  • composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
9151positivegrowth30mesophilic
67770positivegrowth25mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin+3.4.21.1
68382trypsin+3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
49196-+++-+--++++--------

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
49196-----------------+--+

Isolation, sampling and environmental information

taxonmaps

  • @ref: 69479
  • File name: preview.99_6987.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_73;96_180;97_196;98_2755;99_6987&stattab=map
  • Last taxonomy: Brevundimonas
  • 16S sequence: AB680378
  • Sequence Identity:
  • Total samples: 26209
  • soil counts: 5309
  • aquatic counts: 6282
  • animal counts: 11833
  • plant counts: 2785

Safety information

risk assessment

  • @ref: 9151
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: Brevundimonas diminuta gene for 16S rRNA, partial sequence, strain: NBRC 13181
  • accession: AB680378
  • length: 1388
  • database: ena
  • NCBI tax ID: 293

External links

@ref: 9151

culture collection no.: DSM 30130, ATCC 4335, IFO 13181, NBRC 13181, CCUG 28327, NRRL B-2395, LMG 3503, IAM 12557, IFO 13182, JCM 20636, NBRC 13182, NCIMB 9407

straininfo link

  • @ref: 71858
  • straininfo: 4030

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9151Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 30130)https://www.dsmz.de/collection/catalogue/details/culture/DSM-30130
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
49196Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 28327)https://www.ccug.se/strain?id=28327
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
71858Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID4030.1StrainInfo: A central database for resolving microbial strain identifiers