Strain identifier

BacDive ID: 22980

Type strain: Yes

Species: Senegalimassilia anaerobia

Strain Designation: JC110

Strain history: <- J.-C. Lagier, Timone Hospital, Marseille, France; JC110

NCBI tax ID(s): 1473216 (species)

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General

@ref: 19307

BacDive-ID: 22980

DSM-Number: 25959

keywords: genome sequence, 16S sequence, Bacteria, obligate anaerobe, mesophilic

description: Senegalimassilia anaerobia JC110 is an obligate anaerobe, mesophilic bacterium that was isolated from human feces of a healthy patient.

NCBI tax id

  • NCBI tax id: 1473216
  • Matching level: species

strain history

  • @ref: 19307
  • history: <- J.-C. Lagier, Timone Hospital, Marseille, France; JC110

doi: 10.13145/bacdive22980.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Coriobacteriia
  • order: Eggerthellales
  • family: Eggerthellaceae
  • genus: Senegalimassilia
  • species: Senegalimassilia anaerobia
  • full scientific name: Senegalimassilia anaerobia corrig. Lagier et al. 2014

  • synonyms

    • @ref: 20215
    • synonym: Senegalemassilia anaerobia

@ref: 19307

domain: Bacteria

phylum: Actinobacteria

class: Coriobacteriia

order: Coriobacteriales

family: Coriobacteriaceae

genus: Senegalimassilia

species: Senegalimassilia anaerobia

full scientific name: Senegalimassilia anaerobia Lagier et al. 2014 emend. Nouioui et al. 2018

strain designation: JC110

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
19307PYG MEDIUM (MODIFIED) (DSMZ Medium 104)yeshttps://mediadive.dsmz.de/medium/104Name: PYG MEDIUM (modified) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water
19307FASTIDIOUS ANAEROBE BROTH (DSMZ Medium 1203a)yeshttps://mediadive.dsmz.de/medium/1203aName: FASTIDIOUS ANAEROBE BROTH (DSMZ Medium 1203a) Composition: Fastidious Anaerobe Basal Broth 35.4 g/l Distilled water

culture temp

  • @ref: 19307
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 19307
  • oxygen tolerance: obligate anaerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838016199urea-hydrolysis
6838029016arginine+hydrolysis
6838016024D-mannose-fermentation
6838016634raffinose-fermentation
6838029985L-glutamate-degradation
6838017632nitrate-reduction
6838027897tryptophan-energy source

metabolite production

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68380serine arylamidase-
68380glutamyl-glutamate arylamidase-
68380histidine arylamidase-
68380glycin arylamidase-
68380alanine arylamidase-3.4.11.2
68380tyrosine arylamidase-
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucine arylamidase-3.4.11.1
68380phenylalanine arylamidase-
68380leucyl glycin arylamidase-3.4.11.1
68380proline-arylamidase-3.4.11.5
68380L-arginine arylamidase-
68380alkaline phosphatase-3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase-3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase-3.2.1.21
68380alpha-glucosidase-3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase-3.2.1.23
68380alpha-galactosidase-3.2.1.22
68380arginine dihydrolase+3.5.3.6
68380urease-3.5.1.5

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
19307-+---------------------------

Isolation, sampling and environmental information

isolation

  • @ref: 19307
  • sample type: human feces of a healthy patient
  • country: Senegal
  • origin.country: SEN
  • continent: Africa

isolation source categories

Cat1Cat2Cat3
#Infection#Patient
#Host#Human
#Host Body Product#Gastrointestinal tract#Feces (Stool)

taxonmaps

  • @ref: 69479
  • File name: preview.99_7155.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_627;96_3354;97_4113;98_5262;99_7155&stattab=map
  • Last taxonomy: Senegalimassilia anaerobia subclade
  • 16S sequence: JF824809
  • Sequence Identity:
  • Total samples: 14835
  • soil counts: 93
  • aquatic counts: 529
  • animal counts: 14190
  • plant counts: 23

Safety information

risk assessment

  • @ref: 19307
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 19307
  • description: Senegalimassilia anaerobia JC110 16S ribosomal RNA gene, partial sequence
  • accession: JF824809
  • length: 1341
  • database: ena
  • NCBI tax ID: 1034345

Genome sequences

  • @ref: 66792
  • description: Senegalimassilia anaerobia JC110
  • accession: 2547132148
  • assembly level: draft
  • database: img
  • NCBI tax ID: 1034345

GC content

  • @ref: 19307
  • GC-content: 60.9
  • method: sequence analysis

External links

@ref: 19307

culture collection no.: DSM 25959, CSUR P147

straininfo link

  • @ref: 87226
  • straininfo: 403288

literature

topicPubmed-IDtitleauthorsjournalDOIyeartopic2mesh
Genetics24019984Non contiguous-finished genome sequence and description of Senegalemassilia anaerobia gen. nov., sp. nov.Lagier JC, Elkarkouri K, Rivet R, Couderc C, Raoult D, Fournier PEStand Genomic Sci10.4056/sigs.32466652013Phylogeny
Phylogeny31913113Senegalimassilia faecalis sp. nov., an anaerobic actinobacterium isolated from human faeces, and emended description of the genus Senegalimassilia.Han KI, Kim JS, Lee KC, Eom MK, Suh MK, Kim HS, Park SH, Lee JH, Kang SW, Park JE, Oh BS, Yu SY, Choi SH, Lee DH, Yoon H, Kim BY, Lee JH, Lee JSInt J Syst Evol Microbiol10.1099/ijsem.0.0039582020PathogenicityActinobacteria/*classification/isolation & purification, Anaerobiosis, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Feces/*microbiology, Glycolipids/chemistry, Humans, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA

Reference

@idauthorscataloguedoi/urltitle
19307Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25959)https://www.dsmz.de/collection/catalogue/details/culture/DSM-25959
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68380Automatically annotated from API rID32A
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
87226Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID403288.1StrainInfo: A central database for resolving microbial strain identifiers