Strain identifier

BacDive ID: 22979

Type strain: Yes

Species: Caldimonas hydrothermale

Strain Designation: HAN-85

Strain history: <- J. P. Touzel and H. Bouraoui, INRA, France; Han-85 <- H. Bouraoui

NCBI tax ID(s): 391358 (species)

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General

@ref: 19237

BacDive-ID: 22979

DSM-Number: 18497

keywords: 16S sequence, Bacteria, thermophilic

description: Caldimonas hydrothermale HAN-85 is a thermophilic bacterium that was isolated from roman hotbath .

NCBI tax id

  • NCBI tax id: 391358
  • Matching level: species

strain history

  • @ref: 19237
  • history: <- J. P. Touzel and H. Bouraoui, INRA, France; Han-85 <- H. Bouraoui

doi: 10.13145/bacdive22979.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Comamonadaceae
  • genus: Caldimonas
  • species: Caldimonas hydrothermale
  • full scientific name: Caldimonas hydrothermale Bouraoui et al. 2010

@ref: 19237

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Comamonadaceae

genus: Caldimonas

species: Caldimonas hydrothermale

full scientific name: Caldimonas hydrothermale Bouraoui et al. 2010

strain designation: HAN-85

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
19237NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
19237LB (Luria-Bertani) MEDIUM (DSMZ Medium 381)yeshttps://mediadive.dsmz.de/medium/381Name: LB (Luria-Bertani) MEDIUM (DSMZ Medium 381) Composition: Agar 20.0 g/l NaCl 10.0 g/l Tryptone 10.0 g/l Yeast extract 5.0 g/l Distilled water
19237OXOID NUTRIENT BROTH (DSMZ Medium 948)yeshttps://mediadive.dsmz.de/medium/948Name: OXOID NUTRIENT BROTH (DSMZ Medium 948) Composition: Nutrient broth 13.0 g/l Distilled water

culture temp

  • @ref: 19237
  • growth: positive
  • type: growth
  • temperature: 50
  • range: thermophilic

Isolation, sampling and environmental information

isolation

  • @ref: 19237
  • sample type: roman hotbath (Hammam El-Borma)
  • geographic location: Tozeur (33°55'N 8°08'E/33.917°N 8.133°E)
  • country: Tunisia
  • origin.country: TUN
  • continent: Africa
  • latitude: 33.9167
  • longitude: 8.1333

isolation source categories

  • Cat1: #Engineered
  • Cat2: #Built environment

taxonmaps

  • @ref: 69479
  • File name: preview.99_6648.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_1;96_3153;97_3862;98_4904;99_6648&stattab=map
  • Last taxonomy: Caldimonas
  • 16S sequence: AM283038
  • Sequence Identity:
  • Total samples: 1155
  • soil counts: 193
  • aquatic counts: 452
  • animal counts: 357
  • plant counts: 153

Sequence information

16S sequences

  • @ref: 19237
  • description: Caldimonas hydrothermale partial 16S rRNA gene, type strain Han-85T
  • accession: AM283038
  • length: 1518
  • database: ena
  • NCBI tax ID: 391358

GC content

  • @ref: 19237
  • GC-content: 68.3
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 19237

culture collection no.: DSM 18497, LMG 23755

literature

  • topic: Phylogeny
  • Pubmed-ID: 20442988
  • title: Caldimonas hydrothermale sp. nov., a novel thermophilic bacterium isolated from Roman hot bath in south Tunisia.
  • authors: Bouraoui H, Boukari I, Touzel JP, O'Donohue M, Manai M
  • journal: Arch Microbiol
  • DOI: 10.1007/s00203-010-0576-6
  • year: 2010
  • mesh: Aerobiosis, Base Composition, Comamonadaceae/*classification/cytology/*isolation & purification/physiology, DNA, Bacterial/chemistry/genetics, Fatty Acids/analysis, Genes, rRNA, Genotype, Hot Springs/*microbiology, Hot Temperature, Molecular Sequence Data, Phylogeny, Temperature, Tunisia
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitle
19237Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18497)https://www.dsmz.de/collection/catalogue/details/culture/DSM-18497
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta