Strain identifier
BacDive ID: 22957
Type strain: 
Species: Chlamydia abortus
Strain Designation: S26/3
Strain history: <- D. Longbottom, Moredun Res. Inst., Edinburgh, Scotland, UK; S26/3
NCBI tax ID(s): 83555 (species)
version 9.1 (current version)
General
@ref: 19027
BacDive-ID: 22957
DSM-Number: 27085
keywords: genome sequence, Bacteria, Gram-negative
description: Chlamydia abortus S26/3 is a Gram-negative bacterium that was isolated from ovine placenta.
NCBI tax id
- NCBI tax id: 83555
- Matching level: species
strain history
- @ref: 19027
- history: <- D. Longbottom, Moredun Res. Inst., Edinburgh, Scotland, UK; S26/3
doi: 10.13145/bacdive22957.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/chlamydiota
- domain: Bacteria
- phylum: Chlamydiota
- class: Chlamydiia
- order: Chlamydiales
- family: Chlamydiaceae
- genus: Chlamydia
- species: Chlamydia abortus
- full scientific name: Chlamydia abortus (Everett et al. 1999) Sachse et al. 2015
synonyms
- @ref: 20215
- synonym: Chlamydophila abortus
@ref: 19027
domain: Bacteria
phylum: Chlamydiae
class: Chlamydiia
order: Chlamydiales
family: Chlamydiaceae
genus: Chlamydia
species: Chlamydia abortus
full scientific name: Chlamydia abortus (Everett et al. 1999) Sachse et al. 2015
strain designation: S26/3
type strain: no
Morphology
colony morphology
- @ref: 19027
- incubation period: 3-7 days
Culture and growth conditions
culture medium
- @ref: 19027
- name: CULTIVATION MEDIUM FOR CHLAMYDIAE (DSMZ Medium 1193)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1193
- composition: Name: CULTIVATION MEDIUM FOR CHLAMYDIAE (DSMZ Medium 1193) Composition: Aminoacids Fetal bovine serum IMDM-Medium
culture temp
- @ref: 19027
- growth: positive
- type: growth
- temperature: 37
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: no
- confidence: 93.849
Isolation, sampling and environmental information
isolation
- @ref: 19027
- sample type: ovine placenta
- geographic location: Scotland, Edinburgh
- country: United Kingdom
- origin.country: GBR
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Mammals | #Caprinae (Sheep/Goat) |
| #Host Body-Site | #Urogenital tract | |
| #Host Body Product | #Urogenital tract |
Safety information
risk assessment
- @ref: 19027
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Chlamydia abortus S26/3 | GCA_000026025 | complete | ncbi | 218497 |
| 66792 | Chlamydia abortus S26/3 | 637000065 | complete | img | 218497 |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 84.04 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 64.691 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 81.133 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 93.849 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 94.36 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 72.908 | no |
External links
@ref: 19027
culture collection no.: DSM 27085
straininfo link
- @ref: 87205
- straininfo: 400145
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 10981698 | Evaluation of strain-specific primer sequences from an abortifacient strain of ovine Chlamydophila abortus (Chalmydia psittaci) for the detection of EAE by PCR. | Creelan JL, McCullough SJ | FEMS Microbiol Lett | 10.1111/j.1574-6968.2000.tb09270.x | 2000 | Abortion, Veterinary/*diagnosis/microbiology, Animals, *Antigens, Bacterial, *Bacterial Outer Membrane Proteins, Blotting, Southern, Cells, Cultured, Chlamydophila/genetics/growth & development/*isolation & purification, Chlamydophila Infections/*diagnosis/microbiology/veterinary, DNA Primers, Female, Fluorometry, Membrane Proteins/genetics, Polymerase Chain Reaction/*methods, Pregnancy, Sensitivity and Specificity, Sheep, Sheep Diseases/*diagnosis/microbiology, Species Specificity | Enzymology |
| Enzymology | 14995977 | Detection of Chlamydophila abortus in ovine milk by immunomagnetic separation-polymerase chain reaction. | Ongor H, Cetinkaya B, Acik MN, Karahan M, Bulut H | J Vet Med B Infect Dis Vet Public Health | 10.1046/j.1439-0450.2003.00716.x | 2004 | Abortion, Veterinary/epidemiology/microbiology, Animals, Chlamydophila/genetics/*isolation & purification, Chlamydophila Infections/epidemiology/microbiology/*veterinary, Female, Immunomagnetic Separation/veterinary, Mice, Mice, Inbred BALB C, Milk/*microbiology, Polymerase Chain Reaction/veterinary, Pregnancy, Sheep Diseases/*epidemiology/*microbiology, Turkey/epidemiology | Phylogeny |
| 15778027 | Mixed infections in vitro with different Chlamydiaceae strains and a cell culture adapted porcine epidemic diarrhea virus. | Stuedli A, Grest P, Schiller I, Pospischil A | Vet Microbiol | 10.1016/j.vetmic.2004.10.023 | 2005 | Animals, Cell Culture Techniques/methods/*veterinary, Chlamydiaceae/*growth & development/physiology, Chlorocebus aethiops, Coculture Techniques/methods/veterinary, Fluorescent Antibody Technique, Indirect/veterinary, Immunohistochemistry/veterinary, Microscopy, Electron, Transmission/veterinary, Time Factors, Transmissible gastroenteritis virus/*growth & development/physiology, Vero Cells | ||
| Genetics | 15837807 | The Chlamydophila abortus genome sequence reveals an array of variable proteins that contribute to interspecies variation. | Thomson NR, Yeats C, Bell K, Holden MT, Bentley SD, Livingstone M, Cerdeno-Tarraga AM, Harris B, Doggett J, Ormond D, Mungall K, Clarke K, Feltwell T, Hance Z, Sanders M, Quail MA, Price C, Barrell BG, Parkhill J, Longbottom D | Genome Res | 10.1101/gr.3684805 | 2005 | Bacterial Proteins/*genetics, Base Sequence, Chlamydophila/*genetics, Chromosome Mapping, Computational Biology, Conserved Sequence/genetics, DNA Primers, *Genetic Variation, *Genome, Bacterial, Membrane Proteins/genetics, Molecular Sequence Data, *Phylogeny, Pseudogenes/genetics, Sequence Analysis, DNA, Species Specificity | Phylogeny |
| Transcriptome | 17317791 | Chlamydiae in free-ranging and captive frogs in Switzerland. | Blumer C, Zimmermann DR, Weilenmann R, Vaughan L, Pospischil A | Vet Pathol | 10.1354/vp.44-2-144 | 2007 | Animals, Anura/*microbiology, Bacterial Outer Membrane Proteins/chemistry/genetics, Chlamydia/genetics/*growth & development, Chlamydia Infections/*epidemiology/microbiology/*veterinary, DNA, Bacterial/chemistry/genetics, Disease Outbreaks/*veterinary, Immunohistochemistry/veterinary, Polymerase Chain Reaction/veterinary, Prevalence, RNA, Ribosomal, 16S/chemistry/genetics, Retrospective Studies, Sequence Analysis, DNA, Switzerland/epidemiology | Phylogeny |
| Metabolism | 19454212 | Transcriptional analysis of in vitro expression patterns of Chlamydophila abortus polymorphic outer membrane proteins during the chlamydial developmental cycle. | Wheelhouse N, Aitchison K, Spalding L, Livingstone M, Longbottom D | Vet Res | 10.1051/vetres/2009030 | 2009 | Animals, Bacterial Outer Membrane Proteins/*genetics/metabolism, Cells, Chlamydophila/*metabolism, Chlamydophila Infections/*microbiology, Gene Expression Regulation, Bacterial/*physiology, RNA, Bacterial/genetics/metabolism, RNA, Ribosomal, 16S/genetics/metabolism, Time Factors, Transcription, Genetic | Phylogeny |
| Pathogenicity | 20482624 | Increasing effect of a high dose of PG-1 peptide on the infectivity of Chlamydophila abortus. | Donati M, Di Francesco A, Gennaro R, Benincasa M, Di Paolo M, Shurdhi A, Ostanello F, Baldelli R, Cevenini R | FEMS Immunol Med Microbiol | 10.1111/j.1574-695X.2010.00679.x | 2010 | Animals, Anti-Infective Agents/*pharmacology, Antimicrobial Cationic Peptides/*pharmacology, Cell Line, Chlamydophila/*drug effects/*pathogenicity, Inclusion Bodies/microbiology, Macaca mulatta | |
| Phylogeny | 20600479 | Differential identification of Chlamydophila abortus live vaccine strain 1B and C. abortus field isolates by PCR-RFLP. | Laroucau K, Vorimore F, Sachse K, Vretou E, Siarkou VI, Willems H, Magnino S, Rodolakis A, Bavoil PM | Vaccine | 10.1016/j.vaccine.2010.06.064 | 2010 | Bacterial Typing Techniques, Bacterial Vaccines/microbiology, Chlamydophila/classification/*genetics/isolation & purification, *Comparative Genomic Hybridization, DNA, Bacterial/genetics, Point Mutation, Polymerase Chain Reaction, *Polymorphism, Restriction Fragment Length | Enzymology |
| Genetics | 21511408 | Genetic variability of Chlamydophila abortus strains assessed by PCR-RFLP analysis of polymorphic membrane protein-encoding genes. | Sait M, Clark EM, Wheelhouse N, Spalding L, Livingstone M, Sachse K, Markey BK, Magnino S, Siarkou VI, Vretou E, Caro MR, Yaga R, Lainson FA, Smith DG, Wright F, Longbottom D | Vet Microbiol | 10.1016/j.vetmic.2011.03.005 | 2011 | Abortion, Veterinary/*microbiology, Animals, Bacterial Outer Membrane Proteins/*genetics, Base Sequence, Bayes Theorem, Chlamydophila/classification/*genetics, Chlamydophila Infections/*veterinary, DNA Primers/genetics, Female, *Genetic Variation, Genotype, Geography, Livestock/microbiology, Polymerase Chain Reaction/methods, Polymorphism, Restriction Fragment Length, Pregnancy | Phylogeny |
| Genetics | 21685275 | Genome sequence of the Chlamydophila abortus variant strain LLG. | Sait M, Clark EM, Wheelhouse N, Livingstone M, Spalding L, Siarkou VI, Vretou E, Smith DG, Lainson FA, Longbottom D | J Bacteriol | 10.1128/JB.05290-11 | 2011 | Chlamydophila/*classification/*genetics, Genetic Variation, *Genome, Bacterial, Molecular Sequence Data | Phylogeny |
| 28494018 | Pathogenic outcome following experimental infection of sheep with Chlamydia abortus variant strains LLG and POS. | Livingstone M, Wheelhouse N, Ensor H, Rocchi M, Maley S, Aitchison K, Wattegedera S, Wilson K, Sait M, Siarkou V, Vretou E, Entrican G, Dagleish M, Longbottom D | PLoS One | 10.1371/journal.pone.0177653 | 2017 | Animals, Antigens, Bacterial/immunology, Chlamydia/immunology/*physiology, Chlamydia Infections/microbiology/pathology/*veterinary, Female, Immunoblotting, Immunohistochemistry, Placenta/microbiology/pathology, Pregnancy, Sheep/*microbiology, Sheep Diseases/*microbiology/*pathology, Treatment Outcome, Vagina/microbiology | ||
| Phylogeny | 29759381 | Genomic evidence that the live Chlamydia abortus vaccine strain 1B is not attenuated and has the potential to cause disease. | Longbottom D, Sait M, Livingstone M, Laroucau K, Sachse K, Harris SR, Thomson NR, Seth-Smith HMB | Vaccine | 10.1016/j.vaccine.2018.05.042 | 2018 | Abortion, Veterinary/*immunology/microbiology, Animals, Bacterial Vaccines/adverse effects/*genetics/immunology, Chlamydia/classification/*drug effects/genetics/immunology, Chlamydia Infections/immunology/microbiology/*veterinary, Female, *Genome, Bacterial, Methylnitronitrosoguanidine/pharmacology, Mutagens/pharmacology, Phylogeny, Polymorphism, Single Nucleotide, Pregnancy, Sequence Analysis, DNA, Sheep, Sheep Diseases/*immunology/microbiology, Vaccines, Attenuated, Whole Genome Sequencing | Genetics |
| Phylogeny | 30598995 | First Report of Chlamydia abortus in Farmed Fur Animals. | Li Z, Liu P, Cao X, Lou Z, Zareba-Marchewka K, Szymanska-Czerwinska M, Niemczuk K, Hu B, Bai X, Zhou J | Biomed Res Int | 10.1155/2018/4289648 | 2018 | Animals, China, Chlamydia/*genetics/*isolation & purification, DNA/genetics, Dogs, Farms, Female, Foxes/microbiology, Genotype, Male, Mink/microbiology, Phylogeny, RNA, Ribosomal, 16S/genetics, RNA, Ribosomal, 23S/genetics, Species Specificity | Genetics |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 19027 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27085) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-27085 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 87205 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID400145.1 | StrainInfo: A central database for resolving microbial strain identifiers |