Strain identifier
BacDive ID: 22913
Type strain: 
Species: Bacillus pumilus
Strain history: IAM 12050 <-- ATCC 15716 <-- W. Tulecke ("Achromobacter liquefaciens").
NCBI tax ID(s): 1408 (species)
General
@ref: 18791
BacDive-ID: 22913
DSM-Number: 30004
keywords: 16S sequence, Bacteria, mesophilic, human pathogen
description: Bacillus pumilus DSM 30004 is a mesophilic human pathogen that was isolated from air.
NCBI tax id
- NCBI tax id: 1408
- Matching level: species
strain history
| @ref | history |
|---|---|
| 18791 | <- ATCC <- W. Thulecke; RH 2185 (Achromobacter liquefaciens) |
| 67770 | IAM 12050 <-- ATCC 15716 <-- W. Tulecke ("Achromobacter liquefaciens"). |
doi: 10.13145/bacdive22913.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Bacillus
- species: Bacillus pumilus
- full scientific name: Bacillus pumilus Meyer and Gottheil 1901 (Approved Lists 1980)
@ref: 18791
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Bacillaceae
genus: Bacillus
species: Bacillus pumilus
full scientific name: Bacillus pumilus Meyer and Gottheil 1901
type strain: no
Culture and growth conditions
culture medium
- @ref: 18791
- name: NUTRIENT AGAR (DSMZ Medium 1)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1
- composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 18791 | positive | growth | 30 | mesophilic |
| 67770 | positive | growth | 30 | mesophilic |
Isolation, sampling and environmental information
isolation
| @ref | sample type |
|---|---|
| 18791 | air |
| 48340 | Airborne isolate |
isolation source categories
- Cat1: #Environmental
- Cat2: #Air
taxonmaps
- @ref: 69479
- File name: preview.99_885.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_17;97_607;98_698;99_885&stattab=map
- Last taxonomy: Bacillus
- 16S sequence: AB680299
- Sequence Identity:
- Total samples: 20329
- soil counts: 7187
- aquatic counts: 3497
- animal counts: 6743
- plant counts: 2902
Safety information
risk assessment
- @ref: 18791
- pathogenicity human: yes, in single cases
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Bacillus pumilus gene for 16S rRNA, partial sequence, strain: NBRC 12605 | AB680299 | 1474 | ena | 1408 |
| 20218 | Bacillus sp. gene for 16S ribosomal RNA, partial sequence | D55731 | 1470 | ena | 1409 |
External links
@ref: 18791
culture collection no.: DSM 30004, ATCC 15716, DSM 15573, IFO 12605, NBRC 12605, CCUG 26014, IAM 12050, LMG 3455, RH 2185, JCM 20372
straininfo link
- @ref: 87161
- straininfo: 1168
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 18791 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 30004) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-30004 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 48340 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 26014) | https://www.ccug.se/strain?id=26014 | |||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 87161 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID1168.1 | StrainInfo: A central database for resolving microbial strain identifiers |