Strain identifier

BacDive ID: 2283

Type strain: Yes

Species: Trichococcus collinsii

Strain Designation: 37AN3*

Strain history: <- R.S. Tanner; 37AN3*

NCBI tax ID(s): 157076 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 5284

BacDive-ID: 2283

DSM-Number: 14526

keywords: mesophilic, Bacteria, 16S sequence, genome sequence

description: Trichococcus collinsii 37AN3Trichococcus collinsii is a mesophilic bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 157076
  • Matching level: species

strain history: <- R.S. Tanner; 37AN3*

doi: 10.13145/bacdive2283.20220920.7

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Carnobacteriaceae
  • genus: Trichococcus
  • species: Trichococcus collinsii
  • full scientific name: Trichococcus collinsii Liu et al. 2002

@ref: 5284

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Carnobacteriaceae

genus: Trichococcus

species: Trichococcus collinsii

full scientific name: Trichococcus collinsii Liu et al. 2002 emend. Pikuta et al. 2006

strain designation: 37AN3*

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 5284
  • name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
  • growth: yes
  • link: https://bacmedia.dsmz.de/medium/92
  • composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

culture temp

  • @ref: 5284
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

murein

  • @ref: 5284
  • murein short key: A11.31
  • type: A4alpha L-Lys-D-Asp

Isolation, sampling and environmental information

isolation

  • @ref: 5284
  • sample type: soil
  • country: USA
  • origin.country: USA
  • continent: North America

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

  • @ref: 5284
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 5284
  • description: Trichococcus collinsii 16S rRNA gene, strain 37AN3
  • accession: AJ306612
  • length: 1520
  • database: ena
  • NCBI tax ID: 157076

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Trichococcus collinsii DSM 14526GCA_900107505scaffoldncbi157076
66792Trichococcus collinsii strain DSM 14526157076.11wgspatric157076
66792Trichococcus collinsii DSM 145262619618821draftimg157076

External links

@ref: 5284

culture collection no.: DSM 14526, ATCC BAA 296

straininfo link

@refpassport
20218http://www.straininfo.net/strains/304205
20218http://www.straininfo.net/strains/304204

literature

  • topic: Phylogeny
  • Pubmed-ID: 12148615
  • title: Emended description of the genus Trichococcus, description of Trichococcus collinsii sp. nov., and reclassification of Lactosphaera pasteurii as Trichococcus pasteurii comb. nov. and of Ruminococcus palustris as Trichococcus palustris comb. nov. in the low-G+C gram-positive bacteria.
  • authors: Liu JR, Tanner RS, Schumann P, Weiss N, McKenzie CA, Janssen PH, Seviour EM, Lawson PA, Allen TD, Seviour RJ
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/00207713-52-4-1113
  • year: 2002
  • mesh: Bacteria/*classification/genetics/metabolism/ultrastructure, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, DNA, Bacterial/analysis/genetics, DNA, Ribosomal/analysis/genetics, Fatty Acids/analysis, Genes, rRNA, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, RNA, Ribosomal, 16S/genetics, RNA, Ribosomal, 23S/genetics
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
5284Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14526)https://www.dsmz.de/collection/catalogue/details/culture/DSM-14526
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)