Strain identifier
BacDive ID: 2283
Type strain: 
Species: Trichococcus collinsii
Strain Designation: 37AN3*
Strain history: <- R.S. Tanner; 37AN3*
NCBI tax ID(s): 157076 (species)
version 8.1 (current version)
General
@ref: 5284
BacDive-ID: 2283
DSM-Number: 14526
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Trichococcus collinsii 37AN3Trichococcus collinsii is a mesophilic bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 157076
- Matching level: species
strain history
- @ref: 5284
- history: <- R.S. Tanner; 37AN3*
doi: 10.13145/bacdive2283.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Carnobacteriaceae
- genus: Trichococcus
- species: Trichococcus collinsii
- full scientific name: Trichococcus collinsii Liu et al. 2002
@ref: 5284
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Carnobacteriaceae
genus: Trichococcus
species: Trichococcus collinsii
full scientific name: Trichococcus collinsii Liu et al. 2002 emend. Pikuta et al. 2006
strain designation: 37AN3*
type strain: yes
Culture and growth conditions
culture medium
- @ref: 5284
- name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
- growth: yes
- link: https://mediadive.dsmz.de/medium/92
- composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
culture temp
- @ref: 5284
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
murein
- @ref: 5284
- murein short key: A11.31
- type: A4alpha L-Lys-D-Asp
Isolation, sampling and environmental information
isolation
- @ref: 5284
- sample type: soil
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_24449.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_13;96_12252;97_14862;98_18388;99_24449&stattab=map
- Last taxonomy: Trichococcus
- 16S sequence: AJ306612
- Sequence Identity:
- Total samples: 38677
- soil counts: 4890
- aquatic counts: 19650
- animal counts: 13208
- plant counts: 929
Safety information
risk assessment
- @ref: 5284
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 5284
- description: Trichococcus collinsii 16S rRNA gene, strain 37AN3
- accession: AJ306612
- length: 1520
- database: ena
- NCBI tax ID: 157076
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Trichococcus collinsii DSM 14526 | GCA_900107505 | scaffold | ncbi | 157076 |
| 66792 | Trichococcus collinsii strain DSM 14526 | 157076.11 | wgs | patric | 157076 |
| 66792 | Trichococcus collinsii DSM 14526 | 2619618821 | draft | img | 157076 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| glucose-ferment | yes | 71.667 | no |
| flagellated | no | 66.845 | no |
| gram-positive | yes | 85.821 | no |
| anaerobic | no | 75.255 | no |
| aerobic | no | 88.89 | no |
| halophile | no | 51.336 | no |
| spore-forming | no | 86.04 | no |
| thermophile | no | 99.054 | yes |
| glucose-util | yes | 89.732 | no |
| motile | yes | 62.815 | no |
External links
@ref: 5284
culture collection no.: DSM 14526, ATCC BAA 296
straininfo link
- @ref: 71841
- straininfo: 101047
literature
- topic: Phylogeny
- Pubmed-ID: 12148615
- title: Emended description of the genus Trichococcus, description of Trichococcus collinsii sp. nov., and reclassification of Lactosphaera pasteurii as Trichococcus pasteurii comb. nov. and of Ruminococcus palustris as Trichococcus palustris comb. nov. in the low-G+C gram-positive bacteria.
- authors: Liu JR, Tanner RS, Schumann P, Weiss N, McKenzie CA, Janssen PH, Seviour EM, Lawson PA, Allen TD, Seviour RJ
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/00207713-52-4-1113
- year: 2002
- mesh: Bacteria/*classification/genetics/metabolism/ultrastructure, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, DNA, Bacterial/analysis/genetics, DNA, Ribosomal/analysis/genetics, Fatty Acids/analysis, Genes, rRNA, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, RNA, Ribosomal, 16S/genetics, RNA, Ribosomal, 23S/genetics
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 5284 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14526) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-14526 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 71841 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID101047.1 | StrainInfo: A central database for resolving microbial strain identifiers |