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Strain identifier

BacDive ID: 2272

Type strain: Yes

Species: Desemzia incerta

Strain history: ATCC 8363 <-- E. A. Steinhaus.

NCBI tax ID(s): 82801 (species)

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General

@ref: 8931

BacDive-ID: 2272

DSM-Number: 20581

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic

description: Desemzia incerta DSM 20581 is an aerobe, mesophilic bacterium that was isolated from ovaries of lyreman cicada .

NCBI tax id

  • NCBI tax id: 82801
  • Matching level: species

strain history

doi: 10.13145/bacdive2272.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Carnobacteriaceae
  • genus: Desemzia
  • species: Desemzia incerta
  • full scientific name: Desemzia incerta (Steinhaus 1941) Stackebrandt et al. 1999

  • synonyms

    @refsynonym
    20215Brevibacterium incertum
    20215Bacterium incertum

@ref: 8931

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Carnobacteriaceae

genus: Desemzia

species: Desemzia incerta

full scientific name: Desemzia incerta (Steinhaus 1941) Stackebrandt et al. 1999

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 92.322

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
8931CORYNEBACTERIUM MEDIUM WITH BLOOD (DSMZ Medium 240)yeshttps://mediadive.dsmz.de/medium/240Name: CORYNEBACTERIUM MEDIUM WITH BLOOD (DSMZ Medium 240) Composition: Defibrinated Blood 50.0 g/l Agar 15.0 g/l Casein peptone 10.0 g/l Yeast extract 5.0 g/l Glucose 5.0 g/l NaCl 5.0 g/l Distilled water
41054MEDIUM 29- Brain heart agaryesDistilled water make up to (1000.000 ml);Brain heart infusion agar (52.000 g)

culture temp

@refgrowthtypetemperaturerange
8931positivegrowth30mesophilic
41054positivegrowth20psychrophilic
54473positivegrowth30mesophilic
67770positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 54473
  • oxygen tolerance: aerobe

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 94.785

halophily

  • @ref: 69480
  • halophily level: non-halophilic
  • confidence: 71.062

murein

  • @ref: 8931
  • murein short key: A11.33
  • type: A4alpha L-Lys-D-Glu

Isolation, sampling and environmental information

isolation

@refsample typehost species
8931ovaries of lyreman cicada (Tibicen linnei)Tibicen linnei
54473Ovaries of lyreman cicada (Tibicen linnei)
67770Ovaries of the lyreman cicada (Tibicen linnei)Tibicen linnei

isolation source categories

Cat1Cat2Cat3
#Host#Arthropoda#Insecta
#Host Body-Site#Urogenital tract#Ovary

taxonmaps

  • @ref: 69479
  • File name: preview.99_15595.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_13;96_3008;97_3695;98_11781;99_15595&stattab=map
  • Last taxonomy: Desemzia incerta subclade
  • 16S sequence: Y17300
  • Sequence Identity:
  • Total samples: 1055
  • soil counts: 131
  • aquatic counts: 186
  • animal counts: 678
  • plant counts: 60

Safety information

risk assessment

  • @ref: 8931
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Brevibacterium incertum 16S rRNA gene, partialY146501390ena82801
8931Desemzia incerta 16S rRNA geneY173001505ena82801

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Desemzia incerta strain DSM 2058182801.3wgspatric82801
66792Desemzia incerta DSM 205812622736579draftimg82801
67770Desemzia incerta DSM 20581GCA_900115825contigncbi82801
66792Proteobacteria bacterium SPHING1GCA_020160755contigpatric1977087

GC content

  • @ref: 8931
  • GC-content: 40
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 8931

culture collection no.: DSM 20581, ATCC 8363, NCIB 9892, CCUG 38799, JCM 1969, BCRC 11883, CGMCC 1.1918, CIP 104227, IFO 12145, KCTC 3258, NBRC 12145, NCIMB 9892

straininfo link

@refpassport
20218http://www.straininfo.net/strains/122202
20218http://www.straininfo.net/strains/122200
20218http://www.straininfo.net/strains/122203

literature

  • topic: Phylogeny
  • Pubmed-ID: 20729308
  • title: Pisciglobus halotolerans gen. nov., sp. nov., isolated from fish sauce.
  • authors: Tanasupawat S, Thongsanit J, Thawai C, Lee KC, Lee JS
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.025981-0
  • year: 2010
  • mesh: Animals, Bacterial Typing Techniques, Base Composition, Carnobacteriaceae/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fermentation, Fishes, *Food Microbiology, Lactic Acid/biosynthesis, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Thailand
  • topic2: Biotechnology

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
8931Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20581)https://www.dsmz.de/collection/catalogue/details/culture/DSM-20581
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
41054Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/16113
54473Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 38799)https://www.ccug.se/strain?id=38799
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)