Strain identifier

BacDive ID: 2256

Type strain: Yes

Species: Carnobacterium mobile

Strain Designation: C496, MT37L, MT 37L

Strain history: CIP <- 1988, NCFB: strain MT 37L

NCBI tax ID(s): 1449342 (strain), 2750 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 9.3 (current version):
version 9.2:
version 9.1:
version 9:
version 8.1:
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 9.3 (current version)

General

@ref: 1849

BacDive-ID: 2256

DSM-Number: 4848

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic

description: Carnobacterium mobile C496 is a microaerophile, mesophilic bacterium that was isolated from irradiated chicken meat.

NCBI tax id

NCBI tax idMatching level
2750species
1449342strain

strain history

@refhistory
1849<- NCFB <- M.E. Sharpe, MT37L (D. Jones, C496)
360421988, NCFB: strain MT 37L
67770CIP 103159 <-- NCFB 2765 <-- M. E. Sharpe MT37L.
120986CIP <- 1988, NCFB: strain MT 37L

doi: 10.13145/bacdive2256.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Carnobacteriaceae
  • genus: Carnobacterium
  • species: Carnobacterium mobile
  • full scientific name: Carnobacterium mobile Collins et al. 1987

@ref: 1849

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Carnobacteriaceae

genus: Carnobacterium

species: Carnobacterium mobile

full scientific name: Carnobacterium mobile Collins et al. 1987

strain designation: C496, MT37L, MT 37L

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
1849TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
36042MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
120986CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperature
1849positivegrowth30
36042positivegrowth30
49899positivegrowth30
67770positivegrowth30

Physiology and metabolism

oxygen tolerance

  • @ref: 49899
  • oxygen tolerance: microaerophile

murein

  • @ref: 1849
  • murein short key: A31
  • type: A1gamma m-Dpm-direct

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837118305arbutin+builds acid from
6837127613amygdalin-builds acid from
68371320061methyl alpha-D-glucopyranoside-builds acid from
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
6837124265gluconate-builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol-builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837116443D-tagatose-builds acid from
6837162318D-lyxose-builds acid from
6837132528turanose-builds acid from
6837128066gentiobiose+builds acid from
6837117151xylitol-builds acid from
6837128087glycogen-builds acid from
6837128017starch-builds acid from
6837116634raffinose-builds acid from
683716731melezitose-builds acid from
6837115443inulin-builds acid from
6837127082trehalose+builds acid from
6837117992sucrose+builds acid from
6837128053melibiose-builds acid from
6837117716lactose-builds acid from
6837117306maltose+builds acid from
6837117057cellobiose+builds acid from
6837117814salicin+builds acid from
683714853esculin+builds acid from
6837159640N-acetylglucosamine+builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol-builds acid from
6837116899D-mannitol-builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837162345L-rhamnose-builds acid from
6837117266L-sorbose-builds acid from
6837116024D-mannose+builds acid from
6837115824D-fructose+builds acid from
6837117634D-glucose+builds acid from
6837112936D-galactose+builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose-builds acid from
6837116988D-ribose+builds acid from
6837130849L-arabinose-builds acid from
6837117108D-arabinose-builds acid from
6837117113erythritol-builds acid from
6837117754glycerol-builds acid from

API 50CHac

@refQGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
49899-----+----++++--------+-+++++--++------+----------

Isolation, sampling and environmental information

isolation

@refsample type
1849irradiated chicken meat
67770Chicken meat
120986Animal, Irradiated chicken meet

isolation source categories

Cat1Cat2Cat3
#Engineered#Food production#Meat
#Host#Birds#Chicken

taxonmaps

  • @ref: 69479
  • File name: preview.99_2179.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_13;96_41;97_395;98_1702;99_2179&stattab=map
  • Last taxonomy: Carnobacterium mobile
  • 16S sequence: LC153545
  • Sequence Identity:
  • Total samples: 4881
  • soil counts: 426
  • aquatic counts: 636
  • animal counts: 3571
  • plant counts: 248

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
18491Risk group (German classification)
1209861Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Carnobacterium mobile gene for 16S rRNA, partial sequence, strain:DSM 4848AB0834141489nuccore2750
20218Carnobacterium mobile partial 16S rRNA gene, strain DSM 4848 (type strain)AJ317963528nuccore2750
20218Carnobacterium mobile partial 16S rRNAX542711385nuccore2750
67770Carnobacterium mobile gene for 16S ribosomal RNA, partial sequence, strain: JCM 12516LC1535451370nuccore2750

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Carnobacterium mobile DSM 4848 MT37LGCA_000744825contigncbi1449342
66792Carnobacterium mobile DSM 4848 strain MT37L1449342.3wgspatric1449342
66792Carnobacterium mobile MT37L, DSM 48482576861400draftimg2750

GC content

@refGC-contentmethod
184937.0
6777037thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125438gram-positivegram-positivePositive reaction to Gram-stainingyes84.673no
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no89.736yes
125438spore-formingspore-formingAbility to form endo- or exosporesno67.593no
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no82.155no
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno92.596yes
125438motile2+flagellatedAbility to perform flagellated movementyes61.479no
125439BacteriaNetspore_formationAbility to form endo- or exosporesyes83.7
125439BacteriaNetmotilityAbility to perform movementyes78.7
125439BacteriaNetgram_stainReaction to gram-stainingvariable76.8
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthobligate aerobe89.8

External links

@ref: 1849

culture collection no.: DSM 4848, ATCC 49516, NCFB 2765, CCUG 30096, CCM 4112, JCM 12516, CECT 5959, CIP 103159, LMG 9842, NCIMB 12847, NRRL B-14831

straininfo link

  • @ref: 71815
  • straininfo: 92191

literature

  • topic: Phylogeny
  • Pubmed-ID: 29616891
  • title: Carnobacterium antarcticum sp. nov., a psychrotolerant, alkaliphilic bacterium isolated from sandy soil in Antarctica.
  • authors: Zhu S, Lin D, Xiong S, Wang X, Xue Z, Dong B, Shen X, Ma X, Chen J, Yang J
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.002727
  • year: 2018
  • mesh: Antarctic Regions, Bacterial Typing Techniques, Base Composition, Carnobacterium/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Nucleic Acid Hybridization, Peptidoglycan/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology
  • topic2: Transcriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
1849Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 4848)https://www.dsmz.de/collection/catalogue/details/culture/DSM-4848
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
36042Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/14926
49899Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 30096)https://www.ccug.se/strain?id=30096
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
71815Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID92191.1StrainInfo: A central database for resolving microbial strain identifiers
120986Curators of the CIPCollection of Institut Pasteur (CIP 103159)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103159
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann10.1101/2024.08.12.607695Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardyhttps://github.com/GenomeNet/deepGdeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1