Strain identifier

BacDive ID: 2256

Type strain: Yes

Species: Carnobacterium mobile

Strain Designation: C496, MT37L, MT 37L

Strain history: CIP <- 1988, NCFB: strain MT 37L

NCBI tax ID(s): 1449342 (strain), 2750 (species)

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General

@ref: 1849

BacDive-ID: 2256

DSM-Number: 4848

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-positive

description: Carnobacterium mobile C496 is a microaerophile, mesophilic, Gram-positive bacterium that was isolated from irradiated chicken meat.

NCBI tax id

NCBI tax idMatching level
1449342strain
2750species

strain history

@refhistory
1849<- NCFB <- M.E. Sharpe, MT37L (D. Jones, C496)
360421988, NCFB: strain MT 37L
67770CIP 103159 <-- NCFB 2765 <-- M. E. Sharpe MT37L.
120986CIP <- 1988, NCFB: strain MT 37L

doi: 10.13145/bacdive2256.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Carnobacteriaceae
  • genus: Carnobacterium
  • species: Carnobacterium mobile
  • full scientific name: Carnobacterium mobile Collins et al. 1987

@ref: 1849

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Carnobacteriaceae

genus: Carnobacterium

species: Carnobacterium mobile

full scientific name: Carnobacterium mobile Collins et al. 1987

strain designation: C496, MT37L, MT 37L

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 100

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
1849TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
36042MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
120986CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
1849positivegrowth30mesophilic
36042positivegrowth30mesophilic
49899positivegrowth30
67770positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 49899
  • oxygen tolerance: microaerophile

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 99.929

murein

  • @ref: 1849
  • murein short key: A31
  • type: A1gamma m-Dpm-direct

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose+builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose+builds acid from27082
68371sucrose+builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose+builds acid from17306
68371cellobiose+builds acid from17057
68371salicin+builds acid from17814
68371esculin+builds acid from4853
68371arbutin+builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine+builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose+builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754

API 50CHac

@refQGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
49899-----+----++++--------+-+++++--++------+----------

Isolation, sampling and environmental information

isolation

@refsample type
1849irradiated chicken meat
67770Chicken meat
120986Animal, Irradiated chicken meet

isolation source categories

Cat1Cat2Cat3
#Engineered#Food production#Meat
#Host#Birds#Chicken

taxonmaps

  • @ref: 69479
  • File name: preview.99_2179.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_13;96_41;97_395;98_1702;99_2179&stattab=map
  • Last taxonomy: Carnobacterium mobile
  • 16S sequence: LC153545
  • Sequence Identity:
  • Total samples: 4881
  • soil counts: 426
  • aquatic counts: 636
  • animal counts: 3571
  • plant counts: 248

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
18491Risk group (German classification)
1209861Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Carnobacterium mobile gene for 16S rRNA, partial sequence, strain:DSM 4848AB0834141489ena2750
20218Carnobacterium mobile partial 16S rRNA gene, strain DSM 4848 (type strain)AJ317963528ena2750
20218Carnobacterium mobile partial 16S rRNAX542711385ena2750
67770Carnobacterium mobile gene for 16S ribosomal RNA, partial sequence, strain: JCM 12516LC1535451370ena2750

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Carnobacterium mobile DSM 4848 MT37LGCA_000744825contigncbi1449342
66792Carnobacterium mobile DSM 4848 strain MT37L1449342.3wgspatric1449342
66792Carnobacterium mobile MT37L, DSM 48482576861400draftimg2750

GC content

@refGC-contentmethod
184937.0
6777037thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes79no
motileno55.046no
gram-positiveyes90.272no
anaerobicno95.647yes
halophileyes85.785no
spore-formingno73.786no
thermophileno98.221yes
glucose-utilyes91.112no
aerobicno93.689yes
flagellatedno90.203no
glucose-fermentyes78.2no

External links

@ref: 1849

culture collection no.: DSM 4848, ATCC 49516, NCFB 2765, CCUG 30096, CCM 4112, JCM 12516, CECT 5959, CIP 103159, LMG 9842, NCIMB 12847, NRRL B-14831

straininfo link

  • @ref: 71815
  • straininfo: 92191

literature

  • topic: Phylogeny
  • Pubmed-ID: 29616891
  • title: Carnobacterium antarcticum sp. nov., a psychrotolerant, alkaliphilic bacterium isolated from sandy soil in Antarctica.
  • authors: Zhu S, Lin D, Xiong S, Wang X, Xue Z, Dong B, Shen X, Ma X, Chen J, Yang J
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.002727
  • year: 2018
  • mesh: Antarctic Regions, Bacterial Typing Techniques, Base Composition, Carnobacterium/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Nucleic Acid Hybridization, Peptidoglycan/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology
  • topic2: Transcriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
1849Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 4848)https://www.dsmz.de/collection/catalogue/details/culture/DSM-4848
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
36042Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/14926
49899Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 30096)https://www.ccug.se/strain?id=30096
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
71815Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID92191.1StrainInfo: A central database for resolving microbial strain identifiers
120986Curators of the CIPCollection of Institut Pasteur (CIP 103159)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103159