Strain identifier

BacDive ID: 220

Type strain: No

Species: Aerococcus viridans

Strain history: CIP <- 1994, ATCC <- E.R. Hichner

NCBI tax ID(s): 1377 (species)

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General

@ref: 8590

BacDive-ID: 220

DSM-Number: 20311

keywords: 16S sequence, Bacteria, obligate aerobe, mesophilic, Gram-positive, coccus-shaped, human pathogen

description: Aerococcus viridans DSM 20311 is an obligate aerobe, mesophilic, Gram-positive human pathogen that was isolated from septicemia in lobster.

NCBI tax id

  • NCBI tax id: 1377
  • Matching level: species

strain history

@refhistory
8590<- W. Hammes <- ATCC <- E.R. Hitchner (Gaffkya homari)
123857CIP <- 1994, ATCC <- E.R. Hichner

doi: 10.13145/bacdive220.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Aerococcaceae
  • genus: Aerococcus
  • species: Aerococcus viridans
  • full scientific name: Aerococcus viridans Williams et al. 1953 (Approved Lists 1980)

@ref: 8590

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Aerococcaceae

genus: Aerococcus

species: Aerococcus viridans

full scientific name: Aerococcus viridans Williams et al. 1953 emend. Tohno et al. 2014

type strain: no

Morphology

cell morphology

  • @ref: 123857
  • gram stain: positive
  • cell shape: coccus-shaped

colony morphology

  • @ref: 123857
  • hemolysis ability: 1

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
34498MEDIUM 29- Brain heart agaryesDistilled water make up to (1000.000 ml);Brain heart infusion agar (52.000 g)
8590TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yesName: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled waterhttps://mediadive.dsmz.de/medium/92
8590COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yesName: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar basehttps://mediadive.dsmz.de/medium/693
123857CIP Medium 29yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=29

culture temp

@refgrowthtypetemperaturerange
34498positivegrowth30mesophilic
8590positivegrowth30mesophilic
123857positivegrowth10-37
123857nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 123857
  • oxygen tolerance: obligate aerobe

halophily

  • @ref: 123857
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-10 %

murein

  • @ref: 8590
  • murein short key: A11
  • type: A1alpha L-Lys-direct

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate+builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose+builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371sucrose+builds acid from17992
68371melibiose-builds acid from28053
68371lactose+builds acid from17716
68371maltose+builds acid from17306
68371cellobiose+builds acid from17057
68371salicin+builds acid from17814
68371esculin+builds acid from4853
68371arbutin+builds acid from18305
68371amygdalin+builds acid from27613
68371N-acetylglucosamine+builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol+builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol+builds acid from17754
123857esculin+hydrolysis4853
123857nitrate-reduction17632
123857nitrite-reduction16301
68381arginine-hydrolysis29016
68381D-ribose-builds acid from16988
68381sorbitol-builds acid from30911
68381trehalose+builds acid from27082
68381raffinose+builds acid from16634
68381sucrose+builds acid from17992
68381L-arabinose-builds acid from30849
68381D-arabitol-builds acid from18333
68381alpha-cyclodextrin-builds acid from40585
68381hippurate+hydrolysis606565
68381glycogen-builds acid from28087
68381pullulan-builds acid from27941
68381melibiose-builds acid from28053
68381melezitose-builds acid from6731
68381D-tagatose-builds acid from16443
68381urea-hydrolysis16199

metabolite production

@refChebi-IDmetaboliteproduction
12385735581indoleno
6838115688acetoinno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-test
6838115688acetoin-
12385715688acetoin-

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase-
68382acid phosphatase-3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase-3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)-
68382esterase (C 4)-
68382alkaline phosphatase-3.1.3.1
68381urease-3.5.1.5
68381beta-mannosidase-3.2.1.25
68381glycyl tryptophan arylamidase-
68381N-acetyl-beta-glucosaminidase-3.2.1.52
68381pyrrolidonyl arylamidase-3.4.19.3
68381beta-galactosidase-3.2.1.23
68381Alanyl-Phenylalanyl-Proline arylamidase-
68381alkaline phosphatase-3.1.3.1
68381alpha-galactosidase+3.2.1.22
68381beta-glucuronidase+3.2.1.31
68381beta-glucosidase+3.2.1.21
68381arginine dihydrolase-3.5.3.6
123857oxidase-
123857alcohol dehydrogenase-1.1.1.1
123857DNase-
123857catalase-1.11.1.6
123857lecithinase-
123857lysine decarboxylase-4.1.1.18
123857ornithine decarboxylase-4.1.1.17
123857urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
123857--------------------

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
123857+---+/-----++++----+---++++++++-+---+/----+-------+--

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAbeta GALPyrAbeta NAGGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANURE
8590-+-++--+/--+/-+++---------+--+/---+/----

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
123857---------------------------------------------------------------------------------------------------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
8590septicemia in lobster
123857Lobster, septicemiaMaineUnited States of AmericaUSANorth America

isolation source categories

Cat1Cat2Cat3
#Infection#Disease
#Host#Arthropoda#Crustacea

taxonmaps

  • @ref: 69479
  • File name: preview.99_1645.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_13;96_938;97_1091;98_1301;99_1645&stattab=map
  • Last taxonomy: Aerococcus
  • 16S sequence: AY707777
  • Sequence Identity:
  • Total samples: 116598
  • soil counts: 8338
  • aquatic counts: 13880
  • animal counts: 90338
  • plant counts: 4042

Safety information

risk assessment

@refpathogenicity humanpathogenicity animalbiosafety levelbiosafety level comment
8590yesyes2Risk group (German classification)
1238571Risk group (French classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: Aerococcus viridans strain ATCC 10400 16S ribosomal RNA gene, partial sequence
  • accession: AY707777
  • length: 1419
  • database: ena
  • NCBI tax ID: 1377

GC content

  • @ref: 8590
  • GC-content: 34.0

External links

@ref: 8590

culture collection no.: DSM 20311, ATCC 10400, CIP 104074

straininfo link

  • @ref: 69903
  • straininfo: 45491

literature

Pubmed-IDtitleauthorsjournalDOIyearmeshtopic
6885802Direct measurement of peptidoglycan cross-linking in bacteria by 15N nuclear magnetic resonance.Jacob GS, Schaefer J, Wilson GE JrJ Biol ChemS0021-9258(17)44347-X1983Magnetic Resonance Spectroscopy, *Peptidoglycan, Streptococcus/*analysis
26598140Aerococcus viridans var. homari: The presence of capsule and the relationship to virulence in American lobster (Homarus americanus).Clark KF, Wadowska D, Greenwood SJJ Invertebr Pathol10.1016/j.jip.2015.11.0072015Aerococcus/*pathogenicity/ultrastructure, Animals, Bacterial Capsules/*physiology, Disease Resistance, Host-Pathogen Interactions, Nephropidae/immunology/*microbiology, VirulencePathogenicity

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
8590Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20311)https://www.dsmz.de/collection/catalogue/details/culture/DSM-20311
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
34498Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15941
68371Automatically annotated from API 50CH acid
68381Automatically annotated from API rID32STR
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69903Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID45491.1StrainInfo: A central database for resolving microbial strain identifiers
123857Curators of the CIPCollection of Institut Pasteur (CIP 104074)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104074