Strain identifier
BacDive ID: 2129
Type strain:
Species: Campylobacter sputorum
Strain Designation: 14479
Strain history: CIP <- 1998, CCUG <- M.A. Karmali, Toronto, Canada <- B.D. Firehammer: strain 14479
NCBI tax ID(s): 206 (species)
General
@ref: 2004
BacDive-ID: 2129
DSM-Number: 5364
keywords: 16S sequence, Bacteria, microaerophile, mesophilic, Gram-negative, motile, rod-shaped
description: Campylobacter sputorum 14479 is a microaerophile, mesophilic, Gram-negative bacterium that was isolated from ovine faeces.
NCBI tax id
- NCBI tax id: 206
- Matching level: species
strain history
@ref | history |
---|---|
2004 | <- LMG <- CCUG <- M.A. Karmali <- B.D. Firehammer; 14479 |
123288 | CIP <- 1998, CCUG <- M.A. Karmali, Toronto, Canada <- B.D. Firehammer: strain 14479 |
doi: 10.13145/bacdive2129.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Epsilonproteobacteria
- order: Campylobacterales
- family: Campylobacteraceae
- genus: Campylobacter
- species: Campylobacter sputorum
- full scientific name: Campylobacter sputorum (Prévot 1940) Véron and Chatelain 1973 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Vibrio sputorum
@ref: 2004
domain: Bacteria
phylum: Proteobacteria
class: Epsilonproteobacteria
order: Campylobacterales
family: Campylobacteraceae
genus: Campylobacter
species: Campylobacter sputorum
full scientific name: Campylobacter sputorum (Prévot 1940) Véron and Chatelain 1973 emend. On et al. 1998
strain designation: 14479
type strain: no
Morphology
cell morphology
- @ref: 123288
- gram stain: negative
- cell shape: rod-shaped
- motility: yes
colony morphology
@ref | incubation period |
---|---|
2004 | 1-2 days |
123288 |
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
2004 | COLUMBIA BLOOD AGAR (DSMZ Medium 429) | yes | https://mediadive.dsmz.de/medium/429 | Name: COLUMBIA BLOOD AGAR (DSMZ Medium 429) Composition: Horse blood 40.0 g/l Columbia agar base |
39296 | MEDIUM 262 - Columbia agar with 30 % horse blood | yes | Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (300.000 ml) | |
123288 | Brucella broth | yes | ||
123288 | CIP Medium 262 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=262 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
2004 | positive | growth | 37 | mesophilic |
39296 | positive | growth | 37 | mesophilic |
123288 | positive | growth | 30-41 | |
123288 | no | growth | 5 | psychrophilic |
123288 | no | growth | 10 | psychrophilic |
123288 | no | growth | 25 | mesophilic |
123288 | no | growth | 45 | thermophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 2004
- oxygen tolerance: microaerophile
halophily
- @ref: 123288
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 3.5 %
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
123288 | 606565 | hippurate | - | hydrolysis |
123288 | 17632 | nitrate | + | reduction |
123288 | 16301 | nitrite | - | reduction |
68373 | 16199 | urea | - | hydrolysis |
68373 | 606565 | hippurate | - | hydrolysis |
68373 | 78019 | triphenyltetrazolium chloride | + | reduction |
68373 | 17634 | D-glucose | - | assimilation |
68373 | 30089 | acetate | - | assimilation |
68373 | 17272 | propionate | - | assimilation |
68373 | 25115 | malate | + | assimilation |
68373 | 16947 | citrate | - | assimilation |
antibiotic resistance
@ref | ChEBI | metabolite | is antibiotic | is sensitive | sensitivity conc. |
---|---|---|---|---|---|
68373 | 48923 | erythromycin | yes | yes | 14 µg |
68373 | 474053 | cefazolin | yes | yes | 224 µg |
68373 | 100147 | nalidixic acid | yes | yes | 84 µg |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68373 | 16136 | hydrogen sulfide | yes |
123288 | 35581 | indole | no |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68382 | alpha-fucosidase | - | 3.2.1.51 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | alpha-glucosidase | + | 3.2.1.20 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | trypsin | - | 3.4.21.4 |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | valine arylamidase | - | |
68382 | leucine arylamidase | - | 3.4.11.1 |
68382 | lipase (C 14) | - | |
68382 | esterase lipase (C 8) | + | |
68382 | esterase (C 4) | - | |
68382 | alkaline phosphatase | - | 3.1.3.1 |
68373 | catalase | + | 1.11.1.6 |
68373 | alkaline phosphatase | - | 3.1.3.1 |
68373 | L-aspartate arylamidase | + | 3.4.11.21 |
68373 | L-arginine arylamidase | - | |
68373 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
68373 | gamma-glutamyltransferase | - | 2.3.2.2 |
68373 | urease | - | 3.5.1.5 |
123288 | oxidase | + | |
123288 | gelatinase | - | |
123288 | catalase | + | 1.11.1.6 |
123288 | gamma-glutamyltransferase | - | 2.3.2.2 |
123288 | urease | - | 3.5.1.5 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
123288 | - | - | - | + | - | - | - | - | - | - | + | + | - | - | - | + | - | - | - | - |
API CAM
@ref | URE | NIT | EST | HIP | GGT | TTC | PYRA | ArgA | AspA | PAL | H2S | GLU | SUT | NAL | CFZ | ACE | PROP | MLT | CIT | ERO | CAT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
45631 | - | - | + | - | - | + | - | - | + | - | + | - | - | - | - | - | - | + | - | - | + |
2004 | - | + | - | - | - | + | - | - | + | - | + | - | + | - | - | - | - | + | - | - | + |
Isolation, sampling and environmental information
isolation
@ref | sample type |
---|---|
2004 | ovine faeces |
45631 | Ovine feces |
123288 | Animal, Sheep, feces |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Mammals | #Caprinae (Sheep/Goat) |
#Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
2004 | 2 | Risk group (German classification) |
123288 | 2 | Risk group (French classification) |
Sequence information
16S sequences
- @ref: 20218
- description: Burkholderia solanacearum strain CIP365 16S ribosomal RNA gene, partial sequence
- accession: U28220
- length: 1462
- database: ena
- NCBI tax ID: 305
GC content
- @ref: 2004
- GC-content: 31.8
- method: thermal denaturation, midpoint method (Tm)
External links
@ref: 2004
culture collection no.: DSM 5364, ATCC 33711, CCUG 12017, CIP 365, LMG 6618, CIP 105560
straininfo link
- @ref: 71757
- straininfo: 1565
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
2004 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 5364) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-5364 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
39296 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/17593 | ||||
45631 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 12017) | https://www.ccug.se/strain?id=12017 | |||
68373 | Automatically annotated from API CAM | |||||
68382 | Automatically annotated from API zym | |||||
71757 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID1565.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
123288 | Curators of the CIP | Collection of Institut Pasteur (CIP 105560) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105560 |