Strain identifier

BacDive ID: 2129

Type strain: No

Species: Campylobacter sputorum

Strain Designation: 14479

Strain history: CIP <- 1998, CCUG <- M.A. Karmali, Toronto, Canada <- B.D. Firehammer: strain 14479

NCBI tax ID(s): 206 (species)

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General

@ref: 2004

BacDive-ID: 2129

DSM-Number: 5364

keywords: 16S sequence, Bacteria, microaerophile, mesophilic, Gram-negative, motile, rod-shaped

description: Campylobacter sputorum 14479 is a microaerophile, mesophilic, Gram-negative bacterium that was isolated from ovine faeces.

NCBI tax id

  • NCBI tax id: 206
  • Matching level: species

strain history

@refhistory
2004<- LMG <- CCUG <- M.A. Karmali <- B.D. Firehammer; 14479
123288CIP <- 1998, CCUG <- M.A. Karmali, Toronto, Canada <- B.D. Firehammer: strain 14479

doi: 10.13145/bacdive2129.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Epsilonproteobacteria
  • order: Campylobacterales
  • family: Campylobacteraceae
  • genus: Campylobacter
  • species: Campylobacter sputorum
  • full scientific name: Campylobacter sputorum (Prévot 1940) Véron and Chatelain 1973 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Vibrio sputorum

@ref: 2004

domain: Bacteria

phylum: Proteobacteria

class: Epsilonproteobacteria

order: Campylobacterales

family: Campylobacteraceae

genus: Campylobacter

species: Campylobacter sputorum

full scientific name: Campylobacter sputorum (Prévot 1940) Véron and Chatelain 1973 emend. On et al. 1998

strain designation: 14479

type strain: no

Morphology

cell morphology

  • @ref: 123288
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

colony morphology

@refincubation period
20041-2 days
123288

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
2004COLUMBIA BLOOD AGAR (DSMZ Medium 429)yeshttps://mediadive.dsmz.de/medium/429Name: COLUMBIA BLOOD AGAR (DSMZ Medium 429) Composition: Horse blood 40.0 g/l Columbia agar base
39296MEDIUM 262 - Columbia agar with 30 % horse bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (300.000 ml)
123288Brucella brothyes
123288CIP Medium 262yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=262

culture temp

@refgrowthtypetemperaturerange
2004positivegrowth37mesophilic
39296positivegrowth37mesophilic
123288positivegrowth30-41
123288nogrowth5psychrophilic
123288nogrowth10psychrophilic
123288nogrowth25mesophilic
123288nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 2004
  • oxygen tolerance: microaerophile

halophily

  • @ref: 123288
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 3.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
123288606565hippurate-hydrolysis
12328817632nitrate+reduction
12328816301nitrite-reduction
6837316199urea-hydrolysis
68373606565hippurate-hydrolysis
6837378019triphenyltetrazolium chloride+reduction
6837317634D-glucose-assimilation
6837330089acetate-assimilation
6837317272propionate-assimilation
6837325115malate+assimilation
6837316947citrate-assimilation

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitivesensitivity conc.
6837348923erythromycinyesyes14 µg
68373474053cefazolinyesyes224 µg
68373100147nalidixic acidyesyes84 µg

metabolite production

@refChebi-IDmetaboliteproduction
6837316136hydrogen sulfideyes
12328835581indoleno

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase-3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)-
68382alkaline phosphatase-3.1.3.1
68373catalase+1.11.1.6
68373alkaline phosphatase-3.1.3.1
68373L-aspartate arylamidase+3.4.11.21
68373L-arginine arylamidase-
68373pyrrolidonyl arylamidase-3.4.19.3
68373gamma-glutamyltransferase-2.3.2.2
68373urease-3.5.1.5
123288oxidase+
123288gelatinase-
123288catalase+1.11.1.6
123288gamma-glutamyltransferase-2.3.2.2
123288urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
123288---+------++---+----

API CAM

@refURENITESTHIPGGTTTCPYRAArgAAspAPALH2SGLUSUTNALCFZACEPROPMLTCITEROCAT
45631--+--+--+-+------+--+
2004-+---+--+-+-+----+--+

Isolation, sampling and environmental information

isolation

@refsample type
2004ovine faeces
45631Ovine feces
123288Animal, Sheep, feces

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Caprinae (Sheep/Goat)
#Host Body Product#Gastrointestinal tract#Feces (Stool)

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
20042Risk group (German classification)
1232882Risk group (French classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: Burkholderia solanacearum strain CIP365 16S ribosomal RNA gene, partial sequence
  • accession: U28220
  • length: 1462
  • database: ena
  • NCBI tax ID: 305

GC content

  • @ref: 2004
  • GC-content: 31.8
  • method: thermal denaturation, midpoint method (Tm)

External links

@ref: 2004

culture collection no.: DSM 5364, ATCC 33711, CCUG 12017, CIP 365, LMG 6618, CIP 105560

straininfo link

  • @ref: 71757
  • straininfo: 1565

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
2004Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 5364)https://www.dsmz.de/collection/catalogue/details/culture/DSM-5364
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
39296Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/17593
45631Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 12017)https://www.ccug.se/strain?id=12017
68373Automatically annotated from API CAM
68382Automatically annotated from API zym
71757Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID1565.1StrainInfo: A central database for resolving microbial strain identifiers
123288Curators of the CIPCollection of Institut Pasteur (CIP 105560)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105560