Strain identifier

BacDive ID: 2103

Type strain: Yes

Species: Campylobacter coli

Strain Designation: Brussels, 1407

Strain history: CIP <- 1970, A. Florent: strain 1407

NCBI tax ID(s): 195 (species)

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General

@ref: 1684

BacDive-ID: 2103

DSM-Number: 4689

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-negative

description: Campylobacter coli Brussels is a microaerophile, mesophilic, Gram-negative bacterium that was isolated from pig faeces.

NCBI tax id

  • NCBI tax id: 195
  • Matching level: species

strain history

@refhistory
1684<- NCTC <- A. Florent, Brussels
416701970, A. Florent: strain 1407
67770NCTC 11366 <-- CIP 70.80 <-- A. Florent 1407.
118337CIP <- 1970, A. Florent: strain 1407

doi: 10.13145/bacdive2103.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Epsilonproteobacteria
  • order: Campylobacterales
  • family: Campylobacteraceae
  • genus: Campylobacter
  • species: Campylobacter coli
  • full scientific name: Campylobacter coli (Doyle 1948) Véron and Chatelain 1973 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Vibrio coli
    20215Campylobacter hyoilei

@ref: 1684

domain: Bacteria

phylum: Proteobacteria

class: Epsilonproteobacteria

order: Campylobacterales

family: Campylobacteraceae

genus: Campylobacter

species: Campylobacter coli

full scientific name: Campylobacter coli (Doyle 1948) Véron and Chatelain 1973

strain designation: Brussels, 1407

type strain: yes

Morphology

cell morphology

@refgram stainconfidencecell shapemotility
69480negative99.996
118337negativerod-shapedyes

colony morphology

@refincubation period
16841-2 days
118337

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
1684COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
41670MEDIUM 6 - Columbia agar with 10 % horse bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
118337Brucella brothyes
118337CIP Medium 6yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6

culture temp

@refgrowthtypetemperaturerange
1684positivegrowth37mesophilic
41670positivegrowth37mesophilic
67770positivegrowth37mesophilic
118337positivegrowth30-45
118337nogrowth5psychrophilic
118337nogrowth10psychrophilic
118337nogrowth25mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 1684
  • oxygen tolerance: microaerophile

spore formation

@refspore formationconfidence
69481no94
69480no99.996

halophily

  • @ref: 118337
  • salt: NaCl
  • growth: no
  • tested relation: growth
  • concentration: 3.5 %

observation

  • @ref: 67770
  • observation: quinones: MK-6, MMK-6

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
118337606565hippurate-hydrolysis
11833717632nitrate+reduction
11833716301nitrite-reduction
6837316199urea-hydrolysis
6837317632nitrate+reduction
6837317634D-glucose-assimilation
6837330089acetate-assimilation
6837325115malate-assimilation

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitivesensitivity conc.is resistant
6837348923erythromycinyesyes14 µg
68373100147nalidixic acidyesyes84 µg
1183370129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)yesnoyes

metabolite production

@refChebi-IDmetaboliteproduction
6837316136hydrogen sulfideno
11833735581indoleno

enzymes

@refvalueactivityec
1684catalase+1.11.1.6
1684cytochrome-c oxidase+1.9.3.1
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase-
68382acid phosphatase-3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
68373L-aspartate arylamidase-3.4.11.21
68373pyrrolidonyl arylamidase-3.4.19.3
68373urease-3.5.1.5
118337oxidase+
118337gelatinase-
118337catalase+1.11.1.6
118337gamma-glutamyltransferase-2.3.2.2
118337urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
118337-+++-+--------------

API CAM

@refURENITESTHIPGGTTTCPYRAArgAAspAPALH2SGLUSUTNALCFZACEPROPMLTCITEROCAT
1684-++--+---+--+/--+/--+/--+/--+
1684-++--+-+/--+--+-+-+---+
1684-++--+-+-+--+-+-+---+
1684-++--+-+----+-+-+---+
1684-+---+------+-+-+---+
1684-+++/--+-+-+--+-+/--+/----
1684-++-+/-+-+-+--+-+-+---+
1684-+---+-+----+-+-+---+
1684-++/---+-+/--+--+-+-+-+-+
1684-++--+-+/--+--+-+-+-+-+
1684-++--+/-------+-+/--+-+/--+
1684-++--+-+-+--+-+-+-+-+
1684-++--+-+-+--+/--+-+/----+
1684-++----+/--+/-----------+
1684-++--+-+/--+/-----+/-------
1684-++--+-+-+--+---+---+
1684-++--+---+----------+
1684-++--+-+-+--+-+-+-+-+

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
1684pig faecesBelgiumBELEurope
67770Pig feces
118337Animal, Pig, feces

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Suidae (Pig,Swine)
#Host Body Product#Gastrointestinal tract#Feces (Stool)

taxonmaps

  • @ref: 69479
  • File name: preview.99_2578.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15775;96_10;97_10;98_12;99_2578&stattab=map
  • Last taxonomy: Campylobacter
  • 16S sequence: HM007569
  • Sequence Identity:
  • Total samples: 4710
  • soil counts: 38
  • aquatic counts: 173
  • animal counts: 4486
  • plant counts: 13

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
16842Risk group (German classification)
1183372Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Campylobacter coli strain ATCC 33559 16S ribosomal RNA gene, partial sequenceGQ1676761420ena195
20218Campylobacter coli strain ATCC 33559 16S-23S ribosomal RNA intergenic spacer, partial sequenceGQ167720876ena195
20218Campylobacter coli strain ATCC 33559 16S ribosomal RNA gene, partial sequenceJX9125051435ena195
20218Campylobacter coli, complete 16S ribosomal RNAL043121458ena195
20218Campylobacter coli 16S ribosomal RNAM590731467ena195
20218Campylobacter coli (VC80) 16S ribosomal RNA, 5' segmentM92314337ena195
20218Campylobacter coli (VC80) 16S ribosomal RNA, middle segmentM92315279ena195
20218Campylobacter coli (VC80) 16S ribosomal RNA, 3' segmentM92316326ena195
1684Campylobacter coli strain DSM 4689 16S ribosomal RNA gene, partial sequenceHM0075691342ena195
67770Campylobacter coli strain LMG 6440 16S ribosomal RNA gene, partial sequenceAF3720921341ena195

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Campylobacter coli NCTC11366GCA_900446355contigncbi195
66792Campylobacter coli LMG6440GCA_003590975contigncbi195
66792Campylobacter coli RM18751183378.4completepatric1183378
66792Campylobacter coli RM18751183378.9plasmidpatric1183378
66792Campylobacter coli RM18751183378.10plasmidpatric1183378
66792Campylobacter coli RM18751183378.11plasmidpatric1183378
66792Campylobacter coli RM18751183378.12plasmidpatric1183378
66792Campylobacter coli strain CCUG 11283195.2490wgspatric195
66792Campylobacter coli strain LMG6440195.1507wgspatric195
66792Campylobacter coli strain NCTC11366195.1513wgspatric195
67770Campylobacter coli CCUG 11283GCA_008802085contigncbi195

GC content

@refGC-contentmethod
168430.8thermal denaturation, midpoint method (Tm)
6777032.9

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno94no
motileyes87.968no
gram-positiveno98.796no
anaerobicno90.063no
aerobicno94.047yes
halophileno88.889no
spore-formingno95.959no
flagellatedyes59.011no
thermophileno84.456yes
glucose-utilno90.892yes
glucose-fermentno88.291no

External links

@ref: 1684

culture collection no.: DSM 4689, ATCC 33559, CCM 7376, CCUG 11283, CIP 7080, LMG 6440, NCTC 11366, JCM 2529, CCUG 14540, LMG 15999, LMG 8847, CIP 70.80, WDCM 00072, CECT 8205

straininfo link

  • @ref: 71750
  • straininfo: 252

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Biotechnology11484421A Campylobacter coli foodborne outbreak in Belgium.Ronveaux O, Quoilin S, Van Loock F, Lheureux P, Struelens M, Butzler JPActa Clin Belg10.1080/17843286.2000.117543172000Acute Disease, Adult, Belgium/epidemiology, Campylobacter Infections/*epidemiology/transmission, *Campylobacter coli, *Disease Outbreaks, Enterocolitis/*epidemiology/microbiology, *Food Microbiology, Humans, Middle AgedPathogenicity
Pathogenicity11759087Single or double mutational alterations of gyrA associated with fluoroquinolone resistance in Campylobacter jejuni and Campylobacter coli.Bachoual R, Ouabdesselam S, Mory F, Lascols C, Soussy CJ, Tankovic JMicrob Drug Resist10.1089/107662901526528002001Anti-Infective Agents/*pharmacology, *Aza Compounds, Campylobacter coli/*drug effects/*genetics, Campylobacter jejuni/*drug effects/*genetics, Ciprofloxacin/pharmacology, DNA Gyrase/*genetics, DNA, Bacterial/genetics, Drug Resistance, Microbial, *Fluoroquinolones, Microbial Sensitivity Tests, Moxifloxacin, Mutation/*genetics, Nalidixic Acid/pharmacology, *Quinolines, Reverse Transcriptase Polymerase Chain Reaction
Enzymology12449248Molecular diversity of Campylobacter coli and C. jejuni isolated from pigs at slaughter by flaA-RFLP analysis and ribotyping.Moore JE, Lanser J, Heuzenroeder M, Ratcliff RM, Millar BC, Madden RHJ Vet Med B Infect Dis Vet Public Health10.1046/j.1439-0450.2002.00595.x2002Animals, Blotting, Southern/veterinary, Campylobacter Infections/epidemiology/microbiology/*veterinary, Campylobacter coli/*genetics/isolation & purification, Campylobacter jejuni/*genetics/isolation & purification, DNA Primers, DNA, Bacterial/*genetics, Flagellin/*genetics, Genotype, Northern Ireland/epidemiology, Polymerase Chain Reaction/veterinary, Polymorphism, Restriction Fragment Length, Ribotyping/veterinary, Swine, Swine Diseases/*epidemiology/microbiologyPhylogeny
Biotechnology18095434Pulsed-plasma gas-discharge inactivation of microbial pathogens in chilled poultry wash water.Rowan NJ, Espie S, Harrower J, Anderson JG, Marsili L, MacGregor SJJ Food Prot10.4315/0362-028x-70.12.28052007Animals, Campylobacter coli/growth & development, Campylobacter jejuni/growth & development, Chickens/*microbiology, Colony Count, Microbial, Decontamination/*methods, Escherichia coli/growth & development, Food Contamination/prevention & control, Food Handling/*methods, Food Microbiology, Food-Processing Industry/*methods, Humans, Listeria monocytogenes/growth & development, Salmonella enteritidis/growth & development, Salmonella typhimurium/growth & development, Steam, Temperature, Time Factors, *Water MicrobiologyPathogenicity
Pathogenicity18505206Comparison of agar dilution and E-test for antimicrobial susceptibility testing of Campylobacter coil isolates recovered from 80 Ontario swine farms.Varela NP, Friendship R, Dewey C, Valdivieso ACan J Vet Res2008*Agar, Animals, Anti-Bacterial Agents/*pharmacology, Campylobacter coli/*drug effects/growth & development, Colony Count, Microbial/instrumentation/methods/standards/veterinary, *Drug Resistance, Bacterial, Microbial Sensitivity Tests/instrumentation/methods/standards/*veterinary, Ontario, Reproducibility of Results, Sensitivity and Specificity, Swine, Swine Diseases/drug therapy/microbiology
Pathogenicity30918323Novel narrow spectrum benzyl thiophene sulfonamide derivatives to control Campylobacter.Deblais L, Helmy YA, Kumar A, Antwi J, Kathayat D, Acuna UM, Huang HC, de Blanco EC, Fuchs JR, Rajashekara GJ Antibiot (Tokyo)10.1038/s41429-019-0168-x2019Animals, Anti-Bacterial Agents/*chemical synthesis/*pharmacology/therapeutic use, Bacteria/drug effects, Campylobacter/*drug effects, Campylobacter Infections/drug therapy/microbiology, Campylobacter coli/drug effects, Campylobacter jejuni/drug effects, Cecum/drug effects/microbiology, Cell Line, Chickens, Colon/drug effects/microbiology, Drug Resistance, Bacterial/drug effects, Foodborne Diseases/microbiology, Humans, Microbial Sensitivity Tests, Sulfonamides/*chemical synthesis/*pharmacology/therapeutic use, Thiophenes/*chemical synthesis/*pharmacology/therapeutic use
Enzymology34584528Use of Ultrasounds to Reduce the Count of Campylobacter coli in Water.Selwet MPol J Microbiol10.33073/pjm-2021-0322021Campylobacter coli/*radiation effects, Colony Count, Microbial, *Sonication, Sound, *Water Microbiology, Water Purification/*methods
34631336Development and Evaluation of Fluorescence Immunochromatography for Rapid and Sensitive Detection of Thermophilic Campylobacter.Asakura H, Sakata J, Sasaki Y, Kawatsu KFood Saf (Tokyo)10.14252/foodsafetyfscj.D-21-000062021

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
1684Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 4689)https://www.dsmz.de/collection/catalogue/details/culture/DSM-4689
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
41670Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/10556
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68373Automatically annotated from API CAM
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
71750Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID252.1StrainInfo: A central database for resolving microbial strain identifiers
118337Curators of the CIPCollection of Institut Pasteur (CIP 70.80)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2070.80