Strain identifier

BacDive ID: 2103

Type strain: Yes

Species: Campylobacter coli

Strain Designation: Brussels

Culture col. no.: DSM 4689, ATCC 33559, CCM 7376, CCUG 11283, CIP 7080, LMG 6440, NCTC 11366

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General

@ref: 1684

BacDive-ID: 2103

DSM-Number: 4689

keywords: microaerophile, Bacteria, 16S sequence, genome sequence, mesophilic

description: Campylobacter coli Brussels is a microaerophile, mesophilic bacterium that was isolated from pig faeces.

strain history

doi: 10.13145/bacdive2103.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/proteobacteria
  • domain: Bacteria
  • phylum: Proteobacteria
  • class: Epsilonproteobacteria
  • order: Campylobacterales
  • family: Campylobacteraceae
  • genus: Campylobacter
  • species: Campylobacter coli
  • full scientific name: Campylobacter coli (Doyle 1948) Véron and Chatelain 1973 (Approved Lists 1980)
  • synonyms

    @refsynonym
    20215Vibrio coli
    20215Campylobacter hyoilei

@ref: 1684

domain: Bacteria

phylum: Proteobacteria

class: Epsilonproteobacteria

order: Campylobacterales

family: Campylobacteraceae

genus: Campylobacter

species: Campylobacter coli

full scientific name: Campylobacter coli (Doyle 1948) Véron and Chatelain 1973

strain designation: Brussels

type strain: yes

Morphology

colony morphology

  • @ref: 1684
  • incubation period: 1-2 days

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
1684COLUMBIA BLOOD MEDIUM (DSMZ Medium 693), microaerophilic (candle jar or gas packs for Campylobacter sp.)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium693.pdf
41670MEDIUM 6 - Columbia agar with 10 % horse bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)

culture temp

@refgrowthtypetemperaturerange
1684positivegrowth37mesophilic
41670positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 1684
  • oxygen tolerance: microaerophile

enzymes

@refvalueactivityec
1684catalase+1.11.1.6
1684cytochrome-c oxidase+1.9.3.1

API CAM

@refURENITESTHIPGGTTTCPYRAArgAAspAPALH2SGLUSUTNALCFZACEPROPMLTCITEROCAT
1684-++--+---+--+/--+/--+/--+/--+
1684-++--+-+/--+--+-+-+---+
1684-++--+-+-+--+-+-+---+
1684-++--+-+----+-+-+---+
1684-+---+------+-+-+---+
1684-+++/--+-+-+--+-+/--+/----
1684-++-+/-+-+-+--+-+-+---+
1684-+---+-+----+-+-+---+
1684-++/---+-+/--+--+-+-+-+-+
1684-++--+-+/--+--+-+-+-+-+
1684-++--+/-------+-+/--+-+/--+
1684-++--+-+-+--+-+-+-+-+
1684-++--+-+-+--+/--+-+/----+
1684-++----+/--+/-----------+
1684-++--+-+/--+/-----+/-------
1684-++--+-+-+--+---+---+
1684-++--+---+----------+
1684-++--+-+-+--+-+-+-+-+

Isolation, sampling and environmental information

isolation

  • @ref: 1684
  • sample type: pig faeces
  • country: Belgium
  • origin.country: BEL
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Suidae (Pig,Swine)
#Host Body Product#Gastrointestinal tract#Feces (Stool)

Safety information

risk assessment

  • @ref: 1684
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Campylobacter coli strain ATCC 33559 16S ribosomal RNA gene, partial sequenceGQ1676761420ena195
20218Campylobacter coli strain ATCC 33559 16S-23S ribosomal RNA intergenic spacer, partial sequenceGQ167720876ena195
20218Campylobacter coli strain ATCC 33559 16S ribosomal RNA gene, partial sequenceJX9125051435ena195
20218Campylobacter coli, complete 16S ribosomal RNAL043121458ena195
20218Campylobacter coli 16S ribosomal RNAM590731467ena195
20218Campylobacter coli (VC80) 16S ribosomal RNA, 5' segmentM92314337ena195
20218Campylobacter coli (VC80) 16S ribosomal RNA, middle segmentM92315279ena195
20218Campylobacter coli (VC80) 16S ribosomal RNA, 3' segmentM92316326ena195
1684Campylobacter coli strain DSM 4689 16S ribosomal RNA gene, partial sequenceHM0075691342ena195

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Campylobacter coli NCTC11366GCA_900446355contigncbi195
66792Campylobacter coli LMG6440GCA_003590975contigncbi195
66792Campylobacter coli CCUG 11283GCA_008802085contigncbi195
66792Campylobacter coli RM18751183378.11plasmidpatric1183378
66792Campylobacter coli RM18751183378.12plasmidpatric1183378
66792Campylobacter coli RM18751183378.4completepatric1183378
66792Campylobacter coli RM18751183378.9plasmidpatric1183378
66792Campylobacter coli RM18751183378.10plasmidpatric1183378
66792Campylobacter coli strain CCUG 11283195.2490wgspatric195
66792Campylobacter coli strain LMG6440195.1507wgspatric195
66792Campylobacter coli strain NCTC11366195.1513wgspatric195

GC content

  • @ref: 1684
  • GC-content: 30.8
  • method: thermal denaturation, midpoint method (Tm)

External links

@ref: 1684

culture collection no.: DSM 4689, ATCC 33559, CCM 7376, CCUG 11283, CIP 7080, LMG 6440, NCTC 11366

straininfo link

@refpassport
20218http://www.straininfo.net/strains/5922
20218http://www.straininfo.net/strains/5918
20218http://www.straininfo.net/strains/690967
20218http://www.straininfo.net/strains/5919
20218http://www.straininfo.net/strains/124488
20218http://www.straininfo.net/strains/5917
20218http://www.straininfo.net/strains/5927

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
1684Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 4689)https://www.dsmz.de/collection/catalogue/details/culture/DSM-4689
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
41670Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/10556
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)